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mir-2494 mir-2494 stem loop [ Drosophila melanogaster (fruit fly) ]

Gene ID: 12798429, updated on 4-Jan-2025

Summary

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Official Symbol
mir-2494provided by FlyBase
Official Full Name
mir-2494 stem loopprovided by FlyBase
Primary source
FLYBASE:FBgn0262233
Locus tag
Dmel_CR42940
See related
miRBase:MI0011583; AllianceGenome:FB:FBgn0262233
Gene type
ncRNA
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
CR42940; dme-mir-2494; dme-miR-2494; dme-miR-2494-5p; Dmel\CR42940; miR-2494; Mir-2494
Summary
Predicted to be involved in miRNA-mediated post-transcriptional gene silencing. Predicted to be part of RISC complex. [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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See mir-2494 in Genome Data Viewer
Location:
89D5-89D5; 3-59 cM
Exon count:
1
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (16618766..16618882)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (12444488..12444604)

Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene Coiled-coil domain containing protein 114

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. MiRNA profiling provides insights on adverse effects of Cr(VI) in the midgut tissues of Drosophila melanogaster. Chandra S, et al. J Hazard Mater, 2015. PMID 25464296
  2. Computational and experimental identification of mirtrons in Drosophila melanogaster and Caenorhabditis elegans. Chung WJ, et al. Genome Res, 2011 Feb. PMID 21177960, Free PMC Article
  3. Adaptive evolution of testis-specific, recently evolved, clustered miRNAs in Drosophila. Mohammed J, et al. RNA, 2014 Aug. PMID 24942624, Free PMC Article
  4. Drosophila anti-nematode and antibacterial immune regulators revealed by RNA-Seq. Castillo JC, et al. BMC Genomics, 2015 Jul 11. PMID 26162375, Free PMC Article
  5. Genome-wide microRNA screening reveals that the evolutionary conserved miR-9a regulates body growth by targeting sNPFR1/NPYR. Suh YS, et al. Nat Commun, 2015 Jul 3. PMID 26138755, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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  • mir-2494-RA; Dmel\mir-2494-RA; CR42940-RA; Dmel\CR42940-RA
  • mir-2494-RB; Dmel\mir-2494-RB; CR42940-RB; Dmel\CR42940-RB
  • mir-2494-RM; Dmel\mir-2494-RM; CR42940-RM; Dmel\CR42940-RM

Gene Ontology Provided by FlyBase

Process Evidence Code Pubs
involved_in miRNA-mediated post-transcriptional gene silencing IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of RISC complex IEA
Inferred from Electronic Annotation
more info
  

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033777.3 Reference assembly

    Range
    16618766..16618882
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. NR_048409.1 RNA Sequence

    Status: REVIEWED

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials