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CG43446 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

Gene ID: 12798498, updated on 18-Sep-2024

Summary

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Official Symbol
CG43446provided by FlyBase
Official Full Name
uncharacterized proteinprovided by FlyBase
Primary source
FLYBASE:FBgn0263400
Locus tag
Dmel_CG43446
See related
AllianceGenome:FB:FBgn0263400
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
Dmel\CG43446
Orthologs
all
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Genomic context

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See CG43446 in Genome Data Viewer
Location:
93B3-93B3; 3-70 cM
Exon count:
2
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (20986504..20987936, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (16812226..16813658, complement)

Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene hadley Neighboring gene Na pump alpha subunit Neighboring gene Na/Ca-exchange protein Neighboring gene Alkaline phosphatase 5 Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Rapid Low-Cost Assembly of the Drosophila melanogaster Reference Genome Using Low-Coverage, Long-Read Sequencing. Solares EA, et al. G3 (Bethesda), 2018 Oct 3. PMID 30018084, Free PMC Article
  2. Next-generation large-scale binary protein interaction network for Drosophila melanogaster. Tang HW, et al. Nat Commun, 2023 Apr 15. PMID 37061542, Free PMC Article
  3. CRISPR-based modular assembly of a UAS-cDNA/ORF plasmid library for more than 5500 Drosophila genes conserved in humans. Wei P, et al. Genome Res, 2020 Jan. PMID 31722958, Free PMC Article
  4. Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species. Sanfilippo P, et al. Genome Biol, 2017 Nov 30. PMID 29191225, Free PMC Article
  5. Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster. Liu X, et al. RNA, 2017 Dec. PMID 28851752, Free PMC Article

See all (17) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

General protein information

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Preferred Names
uncharacterized protein
Names
CG43446-PA
CG43446-PB

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033777.3 Reference assembly

    Range
    20986504..20987936 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001260287.1 → NP_001247216.1  uncharacterized protein Dmel_CG43446, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001247216.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    D4G7E9
    Conserved Domains (1) summary
    cl22851
    Location:3 → 58
    PHD_SF; PHD finger superfamily

  2. NM_001260288.1 → NP_001247217.1  uncharacterized protein Dmel_CG43446, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001247217.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A0B4K6S5
    Conserved Domains (1) summary
    cl22851
    Location:3 → 58
    PHD_SF; PHD finger superfamily
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A0A0B4K6S5 A0A0B4K6S5
D4G7E9 D4G7E9

Gene LinkOut

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Other Literature Sources
Molecular Biology Databases
Research Materials