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mir-1004 mir-1004 stem loop [ Drosophila melanogaster (fruit fly) ]

Gene ID: 12798552, updated on 18-Sep-2024

Summary

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Official Symbol
mir-1004provided by FlyBase
Official Full Name
mir-1004 stem loopprovided by FlyBase
Primary source
FLYBASE:FBgn0262392
Locus tag
Dmel_CR42926
See related
miRBase:MI0005865; AllianceGenome:FB:FBgn0262392
Gene type
ncRNA
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
CR42926; dme-mir-1004; dme-miR-1004; Dmel\CR42926; miR-1004
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Genomic context

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See mir-1004 in Genome Data Viewer
Location:
24C3-24C3; 2-11 cM
Exon count:
1
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2L NT_033779.5 (3767621..3767688)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2L NT_033779.4 (3767621..3767688)

Chromosome 2L - NT_033779.5Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene long non-coding RNA:CR43704 Neighboring gene uncharacterized protein Neighboring gene brother of odd with entrails limited

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The mirtron pathway generates microRNA-class regulatory RNAs in Drosophila. Okamura K, et al. Cell, 2007 Jul 13. PMID 17599402, Free PMC Article
  2. miR-9a mediates the role of Lethal giant larvae as an epithelial growth inhibitor in Drosophila. Daniel SG, et al. Biol Open, 2018 Jan 26. PMID 29361610, Free PMC Article
  3. Distinct and Coordinated Regulation of Small Non-coding RNAs by E2f1 and p53 During Drosophila Development and in Response to DNA Damage. Li D, et al. Front Cell Dev Biol, 2021. PMID 34368144, Free PMC Article
  4. A Drosophila pasha mutant distinguishes the canonical microRNA and mirtron pathways. Martin R, et al. Mol Cell Biol, 2009 Feb. PMID 19047376, Free PMC Article
  5. Genome-wide assessment of post-transcriptional control in the fly brain. Mezan S, et al. Front Mol Neurosci, 2013. PMID 24367289, Free PMC Article

See all (18) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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  • mir-1004-RA; Dmel\mir-1004-RA; CR42926-RA; Dmel\CR42926-RA
  • mir-1004-RB; Dmel\mir-1004-RB; CR42926-RB; Dmel\CR42926-RB
  • mir-1004-RM; Dmel\mir-1004-RM; CR42926-RM; Dmel\CR42926-RM

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033779.5 Reference assembly

    Range
    3767621..3767688
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. NR_047884.1 RNA Sequence

    Status: REVIEWED

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials