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LOC128316839 OCT4-NANOG hESC enhancer GRCh37_chr2:90379469-90380158 [ Homo sapiens (human) ]

Gene ID: 128316839, updated on 12-Sep-2024

Summary

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Gene symbol
LOC128316839
Gene description
OCT4-NANOG hESC enhancer GRCh37_chr2:90379469-90380158
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was validated as an active enhancer by the ChIP-STARR-seq massively parallel reporter assay in naive human embryonic stem cells. This enhancer associates with the OCT4 and NANOG transcription factors. [provided by RefSeq, Jan 2023]
Annotation information
Annotation category: only annotated on alternate loci in reference assembly
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Genomic context

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See LOC128316839 in Genome Data Viewer
Location:
chromosome: 2
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 (ALT_REF_LOCI_1) NT_187524.1 (7944..8633, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (91595353..91596042, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (90379469..90380158, complement)

NT_187524.1Genomic Context describing neighboring genes Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:90374628-90375319 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:91596821-91597610 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:91597611-91598400 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:91598401-91599190 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:91602891-91603394 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:91604405-91604910 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:91604911-91605414 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:91605415-91605918 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:90384511-90385021 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:90385611-90386172 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:90387297-90387859 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:90387860-90388421 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:90388985-90389545 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:90389546-90390108 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:90390109-90390670 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:90391233-90391794 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:90392358-90392919 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr2:90392920-90393482 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:90394129-90394691 Neighboring gene uncharacterized LOC102724983 Neighboring gene immunoglobulin kappa variable 1/OR2-118 (pseudogene)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Functional Dissection of the Enhancer Repertoire in Human Embryonic Stem Cells. Barakat TS, et al. Cell Stem Cell, 2018 Aug 2. PMID 30033119, Free PMC Article

GeneRIFs: Gene References Into Functions

Variation

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See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_149443.1 

    Range
    101..790
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NT_187524.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    7944..8633 complement
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    91595353..91596042 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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