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LOC128899998 KLF13-II enhancer [ Homo sapiens (human) ]

Gene ID: 128899998, updated on 12-Sep-2024

Summary

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Gene symbol
LOC128899998
Gene description
KLF13-II enhancer
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic region was identified as a DNase I hypersensitive site (DHS) in erythroid cells. It was validated as an enhancer that can activate the minP minimal promoter by reporter assays in K562 erythroleukemia cells. [provided by RefSeq, Mar 2023]
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Genomic context

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See LOC128899998 in Genome Data Viewer
Location:
chromosome: 15
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 15 NC_000015.10 (31298793..31299108)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 15 NC_060939.1 (29092912..29093227)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 15 NC_000015.9 (31590996..31591311)

Chromosome 15 - NC_000015.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124903454 Neighboring gene long intergenic non-protein coding RNA 2352 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:31517937-31518509 Neighboring gene long intergenic non-protein coding RNA 3034 Neighboring gene Sharpr-MPRA regulatory region 5138 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:31548124-31548696 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:31570698-31571198 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:31571199-31571699 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:31594474-31595156 Neighboring gene KLF13-III enhancer Neighboring gene VISTA enhancer hs2231 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:31604403-31605163 Neighboring gene KLF13 promoter region Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:31621870-31622434 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:31627858-31628358 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:31628359-31628859 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:31634092-31634903 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:31634904-31635714 Neighboring gene KLF transcription factor 13 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr15:31649687-31650186 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr15:31666033-31667020 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 6267 Neighboring gene uncharacterized LOC105370939 Neighboring gene ubiquitin conjugating enzyme E2 C pseudogene 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comprehensive characterization of erythroid-specific enhancers in the genomic regions of human Krüppel-like factors. Xiong Q, et al. BMC Genomics, 2013 Aug 28. PMID 23985037, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_149964.1 

    Range
    101..416
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000015.10 Reference GRCh38.p14 Primary Assembly

    Range
    31298793..31299108
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    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_011332701.1 Reference GRCh38.p14 PATCHES

    Range
    3472167..3472482
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    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_2

Genomic

  1. NT_187660.1 Reference GRCh38.p14 ALT_REF_LOCI_2

    Range
    3584619..3584934
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060939.1 Alternate T2T-CHM13v2.0

    Range
    29092912..29093227
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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