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LOC128925426 CapStarr-seq enhancer MGSCv37_chr6:37821510-37821693 [ Mus musculus (house mouse) ]

Gene ID: 128925426, updated on 8-Feb-2024

Summary

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Gene symbol
LOC128925426
Gene description
CapStarr-seq enhancer MGSCv37_chr6:37821510-37821693
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Rr368051
Summary
This genomic region was identified as a candidate cis-regulatory module (CRM) in developing mouse thymocytes based on a combination of DNase I hypersensitivity and transcription factor binding. It was validated as an active enhancer by high-throughput CapStarr-seq reporter assays showing weak activity in NIH3T3 fibroblasts. [provided by RefSeq, Mar 2023]
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Genomic context

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See LOC128925426 in Genome Data Viewer
Location:
chromosome: 6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (37848445..37848628)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene ATPase, H+ transporting, lysosomal V0 subunit C, pseudogene 2 Neighboring gene STARR-seq mESC enhancer starr_15603 Neighboring gene STARR-seq mESC enhancer starr_15604 Neighboring gene STARR-seq mESC enhancer starr_15605 Neighboring gene STARR-seq mESC enhancer starr_15606 Neighboring gene STARR-seq mESC enhancer starr_15608 Neighboring gene STARR-seq mESC enhancer starr_15609 Neighboring gene STARR-positive B cell enhancer mm9_chr6:37820554-37820855 Neighboring gene general transcription factor IIB pseudogene Neighboring gene STARR-seq mESC enhancer starr_15610 Neighboring gene tripartite motif-containing 24 Neighboring gene STARR-positive B cell enhancer mm9_chr6:37846121-37846422 Neighboring gene STARR-seq mESC enhancer starr_15611 Neighboring gene STARR-seq mESC enhancer starr_15612 Neighboring gene SV2 related protein homolog (rat)-like Neighboring gene vomeronasal 2, receptor 121 pseudogene Neighboring gene predicted gene, 33494

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. High-throughput and quantitative assessment of enhancer activity in mammals by CapStarr-seq. Vanhille L, et al. Nat Commun, 2015 Apr 15. PMID 25872643

GeneRIFs: Gene References Into Functions

General gene information

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Other Names

  • regulatory region 368051

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_151120.1 

    Range
    101..284
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    37848445..37848628
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version