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LOC129661897 ReSE screen-validated silencer GRCh37_chr7:119835-120053 [ Homo sapiens (human) ]

Gene ID: 129661897, updated on 12-Sep-2024

Summary

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Gene symbol
LOC129661897
Gene description
ReSE screen-validated silencer GRCh37_chr7:119835-120053
Gene type
biological region
Feature type(s)
regulatory: silencer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic sequence represents an accessible chromatin region used in a lentiviral ReSE (repressive ability of silencer elements) screen that assays for cell survival based on transcriptional repression of an apoptosis-inducing fusion protein. This region was identified as a functional silencer in phorbol 12-myristate 13-acetate-treated (for megakaryocytic differentiation) K562 erythroleukemia cells. [provided by RefSeq, Apr 2023]
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Genomic context

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See LOC129661897 in Genome Data Viewer
Location:
chromosome: 7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (119835..120053)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (220030..220247)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (119835..120053)

Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105375113 Neighboring gene uncharacterized LOC101929756 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:81530-82302 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:82303-83073 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:84367-85090 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:85091-85814 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:86539-87262 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:89543-90191 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr7:96283-97052 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:97053-97823 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:108674-109390 Neighboring gene uncharacterized LOC105375114 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:133814-134316 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr7:134317-134819 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:139089-139857 Neighboring gene long intergenic non-protein coding RNA 3015 Neighboring gene Sharpr-MPRA regulatory region 13780 Neighboring gene long intergenic non-protein coding RNA 3014

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Systematic identification of silencers in human cells. Pang B, et al. Nat Genet, 2020 Mar. PMID 32094911, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_158933.1 

    Range
    101..319
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

    Range
    119835..120053
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    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 PATCHES

Genomic

  1. NW_021159998.1 Reference GRCh38.p14 PATCHES

    Range
    95523..95741
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    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_1

Genomic

  1. NT_187558.1 Reference GRCh38.p14 ALT_REF_LOCI_1

    Range
    75757..75974
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    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p14 ALT_REF_LOCI_2

Genomic

  1. NT_187653.1 Reference GRCh38.p14 ALT_REF_LOCI_2

    Range
    112156..112374
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060931.1 Alternate T2T-CHM13v2.0

    Range
    220030..220247
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    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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