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LOC129662901 ReSE screen-validated silencer GRCh37_chr11:40005787-40006001 [ Homo sapiens (human) ]

Gene ID: 129662901, updated on 12-Sep-2024

Summary

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Gene symbol
LOC129662901
Gene description
ReSE screen-validated silencer GRCh37_chr11:40005787-40006001
Gene type
biological region
Feature type(s)
regulatory: silencer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic sequence represents an accessible chromatin region used in a lentiviral ReSE (repressive ability of silencer elements) screen that assays for cell survival based on transcriptional repression of an apoptosis-inducing fusion protein. This region was identified as a functional silencer in phorbol 12-myristate 13-acetate-treated (for megakaryocytic differentiation) K562 erythroleukemia cells. [provided by RefSeq, Apr 2023]
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Genomic context

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See LOC129662901 in Genome Data Viewer
Location:
chromosome: 11
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 11 NC_000011.10 (39984237..39984451)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 11 NC_060935.1 (40130790..40131004)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (40005787..40006001)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105376637 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr11:39868501-39869100 Neighboring gene MT-CO2 pseudogene 26 Neighboring gene adaptor related protein complex 5 subunit mu 1 pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr11:39902599-39903100 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr11:40052323-40052873 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr11:40121095-40121596 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr11:40121597-40122096 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr11:40173418-40174617 Neighboring gene zinc finger CCHC-type containing 9 pseudogene Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr11:40224036-40224631 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr11:40225695-40226477 Neighboring gene NANOG hESC enhancer GRCh37_chr11:40248664-40249165 Neighboring gene leucine rich repeat containing 4C Neighboring gene zinc finger protein 12 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Systematic identification of silencers in human cells. Pang B, et al. Nat Genet, 2020 Mar. PMID 32094911, Free PMC Article

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_159908.1 

    Range
    101..315
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p14 Primary Assembly

    Range
    39984237..39984451
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    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060935.1 Alternate T2T-CHM13v2.0

    Range
    40130790..40131004
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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