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LOC130000917 ATAC-STARR-seq lymphoblastoid active region 27767 [ Homo sapiens (human) ]

Gene ID: 130000917, updated on 12-Sep-2024

Summary

Gene symbol
LOC130000917
Gene description
ATAC-STARR-seq lymphoblastoid active region 27767
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic sequence represents an accessible chromatin region that was validated as an enhancer based on its ability to activate an origin of replication minimal core promoter by the ATAC-STARR-seq (assay for transposase-accessible chromatin with self-transcribing active regulatory region sequencing) massively parallel reporter assay (MPRA) in GM12878 lymphoblastoid cells. [provided by RefSeq, May 2023]
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Genomic context

See LOC130000917 in Genome Data Viewer
Location:
chromosome: 8
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (102586005..102586234)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (103714237..103714466)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (103598233..103598462)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124901998 Neighboring gene uncharacterized LOC105375684 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27763 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27764 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27765 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27766 Neighboring gene outer dense fiber of sperm tails 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:103595853-103596352 Neighboring gene NANOG hESC enhancer GRCh37_chr8:103602512-103603022 Neighboring gene Sharpr-MPRA regulatory region 4303 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 27768 Neighboring gene POU class 5 homeobox 1 pseudogene 2 Neighboring gene Sharpr-MPRA regulatory region 12948 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:103646296-103646796 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:103646797-103647297 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:103665440-103666064 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19442 Neighboring gene H3K27ac hESC enhancer GRCh37_chr8:103667983-103668583 Neighboring gene KLF transcription factor 10

Genomic regions, transcripts, and products

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_180363.1 

    Range
    101..330
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

    Range
    102586005..102586234
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060932.1 Alternate T2T-CHM13v2.0

    Range
    103714237..103714466
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    GenBank, FASTA, Sequence Viewer (Graphics)