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LOC130062617 ATAC-STARR-seq lymphoblastoid active region 13425 [ Homo sapiens (human) ]

Gene ID: 130062617, updated on 12-Sep-2024

Summary

Gene symbol
LOC130062617
Gene description
ATAC-STARR-seq lymphoblastoid active region 13425
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This genomic sequence represents an accessible chromatin region that was validated as an enhancer based on its ability to activate an origin of replication minimal core promoter by the ATAC-STARR-seq (assay for transposase-accessible chromatin with self-transcribing active regulatory region sequencing) massively parallel reporter assay (MPRA) in GM12878 lymphoblastoid cells. [provided by RefSeq, May 2023]
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Genomic context

See LOC130062617 in Genome Data Viewer
Location:
chromosome: 18
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (59953421..59953470)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (60156088..60156137)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 18 NC_000018.9 (57620653..57620702)

Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr18:57566317-57567068 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 9498 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13422 Neighboring gene phorbol-12-myristate-13-acetate-induced protein 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13423 Neighboring gene uncharacterized LOC105372151 Neighboring gene PLEKHB2 pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13424 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 13426 Neighboring gene nuclear factor, erythroid 2 like 3 pseudogene 1 Neighboring gene RNA, 7SL, cytoplasmic 342, pseudogene

Genomic regions, transcripts, and products

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_195509.1 

    Range
    101..150
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

    Range
    59953421..59953470
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060942.1 Alternate T2T-CHM13v2.0

    Range
    60156088..60156137
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)