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COL13A1 collagen type XIII alpha 1 chain [ Homo sapiens (human) ]

Gene ID: 1305, updated on 27-Nov-2024

Summary

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Official Symbol
COL13A1provided by HGNC
Official Full Name
collagen type XIII alpha 1 chainprovided by HGNC
Primary source
HGNC:HGNC:2190
See related
Ensembl:ENSG00000197467 MIM:120350; AllianceGenome:HGNC:2190
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CMS19; COLXIIIA1
Summary
This gene encodes the alpha chain of one of the nonfibrillar collagens. The function of this gene product is not known, however, it has been detected at low levels in all connective tissue-producing cells so it may serve a general function in connective tissues. Unlike most of the collagens, which are secreted into the extracellular matrix, collagen XIII contains a transmembrane domain and the protein has been localized to the plasma membrane. The transcripts for this gene undergo complex and extensive splicing involving at least eight exons. Like other collagens, collagen XIII is a trimer; it is not known whether this trimer is composed of one or more than one alpha chain isomer. A number of alternatively spliced transcript variants have been described, but the full length nature of some of them has not been determined. [provided by RefSeq, Jul 2008]
Expression
Broad expression in prostate (RPKM 4.3), lung (RPKM 4.0) and 19 other tissues See more
Orthologs
mouse all
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Genomic context

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See COL13A1 in Genome Data Viewer
Location:
10q22.1
Exon count:
43
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 10 NC_000010.11 (69801906..69959144)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 10 NC_060934.1 (70670103..70827646)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 10 NC_000010.10 (71561662..71718900)

Chromosome 10 - NC_000010.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124902444 Neighboring gene ribosomal protein L5 pseudogene 26 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr10:71566529-71567728 Neighboring gene uncharacterized LOC105378347 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:71602109-71602610 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:71620307-71621012 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:71626613-71627596 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr10:71627597-71628580 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:71633165-71633944 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:71641515-71642236 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:71662663-71663262 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:71664255-71664755 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3494 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2437 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:71676315-71676994 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:71685663-71686162 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:71706107-71706606 Neighboring gene uncharacterized LOC107984242 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 2438 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:71721094-71721594 Neighboring gene long intergenic non-protein coding RNA 2636 Neighboring gene macroH2A.2 histone Neighboring gene H3K4me1 hESC enhancer GRCh37_chr10:71830815-71831314 Neighboring gene HNF4 motif-containing MPRA enhancer 70 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 3495 Neighboring gene AIF family member 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Human alpha 1 (XIII) collagen gene. Multiple forms of the gene transcripts are generated through complex alternative splicing of several short exons. Tikka L, et al. J Biol Chem, 1991 Sep 15. PMID 1894651
  2. Congenital Myasthenic Syndrome Type 19 Is Caused by Mutations in COL13A1, Encoding the Atypical Non-fibrillar Collagen Type XIII α1 Chain. Logan CV, et al. Am J Hum Genet, 2015 Dec 3. PMID 26626625, Free PMC Article
  3. Overexpression of collagen XIII in extraocular fat affected by active thyroid-associated ophthalmopathy: A crucial piece of the puzzle? Morris OC, et al. Orbit, 2016 Aug. PMID 27245701
  4. Constitutively low expression of collagen XIII alpha 1 may help explain the vulnerability of the inferior rectus muscle to thyroid-associated ophthalmopathy. Morris OC, et al. Orbit, 2016 Dec. PMID 27580012
  5. Gene structure for the alpha 1 chain of a human short-chain collagen (type XIII) with alternatively spliced transcripts and translation termination codon at the 5' end of the last exon. Tikka L, et al. Proc Natl Acad Sci U S A, 1988 Oct. PMID 2459707, Free PMC Article

See all (48) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. TGF-beta2 and collagen play pivotal roles in the spheroid formation and anti-aging of human dermal papilla cells.
    Title: TGF-β2 and collagen play pivotal roles in the spheroid formation and anti-aging of human dermal papilla cells.
  2. Data suggest that ColXIII has a role in age-dependent cortical bone deterioration with possible implications for osteoporosis and fracture risk.
    Title: Collagen XIII-derived ectodomain regulates bone angiogenesis and intracortical remodeling.
  3. patients with COL13A1 mutations present mostly with severe early-onset myasthenic syndrome with feeding and breathing difficulties
    Title: The clinical spectrum of the congenital myasthenic syndrome resulting from COL13A1 mutations.
  4. The data of this study support the causality of COL13A1 variants for Congenital myasthenic syndrome.
    Title: Congenital myasthenic syndrome caused by novel COL13A1 mutations.
  5. Results indicate a function of collagen XIII in promoting cancer metastasis, cell invasion, and anoikis resistance.
    Title: Membrane associated collagen XIII promotes cancer metastasis and enhances anoikis resistance.
  6. The authors report a congenital myasthenic syndrome due to mutations in COL13A1, which encodes an extracellular matrix protein that is concentrated at the neuromuscular junction and highlights a role for these extracellular matrix proteins in maintaining synaptic stability that is independent of the AGRN/MuSK clustering pathway.
    Title: Myasthenic syndromes due to defects in COL13A1 and in the N-linked glycosylation pathway.
  7. Findings suggest a significant association between variants in COL13A1, ADIPOQ, SAMM50, and PNPLA3, and risk of NAFLD/elevated transaminase levels in Mexican adults with an admixed ancestry.
    Title: Genetic variants in COL13A1, ADIPOQ and SAMM50, in addition to the PNPLA3 gene, confer susceptibility to elevated transaminase levels in an admixed Mexican population.
  8. this study shows that COL13A1 production by urothelial carcinoma of the bladder plays a pivotal role in tumor invasion through the induction of tumor budding
    Title: Collagen type IV alpha 1 (COL4A1) and collagen type XIII alpha 1 (COL13A1) produced in cancer cells promote tumor budding at the invasion front in human urothelial carcinoma of the bladder.
  9. It was established that the frequency of individuals with the COL13A1*D/*D genotype was higher in the senile age period. The LAMA2*I/*D genotype was predisposing to longevity among women.
    Title: [Alu insertion-deletion polymorphism of COL13A1 and LAMA2 genes: The analysis of association with longevity].
  10. Urine levels of COL4A1, COL13A1, the combined values of COL4A1 and COL13A1 (COL4A1 + COL13A1), and CYFRA21-1 were significantly elevated in urine from patients with BCa compared to the controls. A high urinary COL4A1 + COL13A1 was found to be an independent risk factor for intravesical recurrence.
    Title: Diagnostic and prognostic role of urinary collagens in primary human bladder cancer.
Submit: New GeneRIF Correction See all GeneRIFs (17)

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

Associated conditions

Description Tests
Congenital myasthenic syndrome 19
MedGen: C4225235 OMIM: 616720 GeneReviews: Congenital Myasthenic Syndromes Overview
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EBI GWAS Catalog

Description
A genome-wide association study identifies a novel locus at 6q22.1 associated with ulcerative colitis.
EBI GWAS Catalog
Genome-wide association study identifies variants associated with histologic features of nonalcoholic Fatty liver disease.
EBI GWAS Catalog
Parkinson disease loci in the mid-western Amish.
EBI GWAS Catalog

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Clone Names

  • FLJ42485

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables extracellular matrix structural constituent conferring tensile strength IBA
Inferred from Biological aspect of Ancestor
more info
  
enables extracellular matrix structural constituent conferring tensile strength RCA
inferred from Reviewed Computational Analysis
more info
 PubMed 
enables heparin binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables heparin binding IDA
Inferred from Direct Assay
more info
 PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
  
involved_in cell-cell adhesion IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in cell-cell adhesion IEP
Inferred from Expression Pattern
more info
 PubMed 
involved_in cell-matrix adhesion IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in cell-matrix adhesion IPI
Inferred from Physical Interaction
more info
 PubMed 
involved_in endochondral ossification ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in extracellular matrix organization IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in morphogenesis of a branching structure IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in morphogenesis of a branching structure ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in skeletal system development IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in basement membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in cell-cell junction IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of collagen type IX trimer IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of collagen type XIII trimer TAS
Traceable Author Statement
more info
 PubMed 
located_in collagen-containing extracellular matrix HDA PubMed 
located_in endoplasmic reticulum lumen TAS
Traceable Author Statement
more info
  
located_in extracellular region TAS
Traceable Author Statement
more info
  
is_active_in extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in plasma membrane TAS
Traceable Author Statement
more info
  
located_in postsynaptic membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
collagen alpha-1(XIII) chain
Names
collagen, type XIII, alpha 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_046344.1 RefSeqGene

    Range
    5019..162257
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001130103.2 → NP_001123575.1  collagen alpha-1(XIII) chain isoform 1

    See identical proteins and their annotated locations for NP_001123575.1

    Status: REVIEWED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
    Source sequence(s)
    AC025426, AI741175, AJ293624, AL138925, BY796799, CN297094
    Consensus CDS
    CCDS44419.1
    UniProtKB/Swiss-Prot
    A6NFR5, B9EGD2, E7EWL8, Q13992, Q13993, Q13994, Q13995, Q13996, Q5TAT4, Q5TAT5, Q5TAT6, Q7KZ33, Q7KZ49, Q99228, Q9NQ52
    Related
    ENSP00000381949.3, ENST00000398978.8
    Conserved Domains (1) summary
    pfam01391
    Location:643 → 702
    Collagen; Collagen triple helix repeat (20 copies)

  2. NM_001320951.2 → NP_001307880.1  collagen alpha-1(XIII) chain isoform 22

    Status: REVIEWED

    Source sequence(s)
    AC024601, AC025426, AI741175, AL138925, BY796799, HY104799
    Conserved Domains (1) summary
    pfam01391
    Location:588 → 645
    Collagen; Collagen triple helix repeat (20 copies)

  3. NM_001368882.1 → NP_001355811.1  collagen alpha-1(XIII) chain isoform 23

    Status: REVIEWED

    Source sequence(s)
    AC024601, AC025426, AL138925
    Consensus CDS
    CCDS91251.1
    UniProtKB/TrEMBL
    A0A2R8YGI3
    Related
    ENSP00000496051.1, ENST00000645393.2
    Conserved Domains (1) summary
    pfam01391
    Location:654 → 713
    Collagen; Collagen triple helix repeat (20 copies)

  4. NM_001368883.1 → NP_001355812.1  collagen alpha-1(XIII) chain isoform 24

    Status: REVIEWED

    Source sequence(s)
    AC024601, AC025426, AL138925
    Consensus CDS
    CCDS91252.1
    UniProtKB/TrEMBL
    A0A6E1W314
    Related
    ENSP00000350463.4, ENST00000357811.8
    Conserved Domains (1) summary
    pfam01391
    Location:319 → 376
    Collagen; Collagen triple helix repeat (20 copies)

  5. NM_001368884.1 → NP_001355813.1  collagen alpha-1(XIII) chain isoform 25

    Status: REVIEWED

    Source sequence(s)
    AC024601, AC025426, AL138925
    Conserved Domains (1) summary
    pfam01391
    Location:532 → 590
    Collagen; Collagen triple helix repeat (20 copies)

  6. NM_001368885.1 → NP_001355814.1  collagen alpha-1(XIII) chain isoform 26

    Status: REVIEWED

    Source sequence(s)
    AC024601, AC025426, AL138925
    Consensus CDS
    CCDS91253.1
    UniProtKB/TrEMBL
    A0A669KB28
    Related
    ENSP00000501050.2, ENST00000673628.2
    Conserved Domains (1) summary
    pfam01391
    Location:520 → 578
    Collagen; Collagen triple helix repeat (20 copies)

  7. NM_001368886.1 → NP_001355815.1  collagen alpha-1(XIII) chain isoform 27

    Status: REVIEWED

    Source sequence(s)
    AC024601, AC025426, AL138925
    Conserved Domains (1) summary
    pfam01391
    Location:397 → 454
    Collagen; Collagen triple helix repeat (20 copies)

  8. NM_001368895.1 → NP_001355824.1  collagen alpha-1(XIII) chain isoform 28

    Status: REVIEWED

    Source sequence(s)
    AC024601, AC025426, AL138925
    Conserved Domains (1) summary
    pfam01391
    Location:523 → 581
    Collagen; Collagen triple helix repeat (20 copies)

  9. NM_001368896.1 → NP_001355825.1  collagen alpha-1(XIII) chain isoform 29

    Status: REVIEWED

    Source sequence(s)
    AC024601, AC025426, AL138925
    Consensus CDS
    CCDS91254.1
    UniProtKB/TrEMBL
    A0A669KB16
    Related
    ENSP00000501084.1, ENST00000674121.1
    Conserved Domains (1) summary
    pfam01391
    Location:557 → 608
    Collagen; Collagen triple helix repeat (20 copies)

  10. NM_001368897.1 → NP_001355826.1  collagen alpha-1(XIII) chain isoform 30

    Status: REVIEWED

    Source sequence(s)
    AC024601, AC025426, AL138925
    Conserved Domains (1) summary
    pfam01391
    Location:494 → 552
    Collagen; Collagen triple helix repeat (20 copies)

  11. NM_001368898.1 → NP_001355827.1  collagen alpha-1(XIII) chain isoform 31

    Status: REVIEWED

    Source sequence(s)
    AC024601, AC025426, AL138925
    Conserved Domains (1) summary
    pfam01391
    Location:556 → 612
    Collagen; Collagen triple helix repeat (20 copies)

  12. NM_080798.4 → NP_542988.3  collagen alpha-1(XIII) chain isoform 21

    See identical proteins and their annotated locations for NP_542988.3

    Status: REVIEWED

    Description
    Transcript Variant: This variant (21) does not contain exons 3B, 4, 5, 12, and 29, based on the exon numbering used in PMID: 1894651. Isoform 21 lacks three internal segments, compared to isoform 1.
    Source sequence(s)
    AC024601, AC025426, AL138925
    Consensus CDS
    CCDS44427.2
    UniProtKB/Swiss-Prot
    Q5TAT6
    Related
    ENSP00000428057.1, ENST00000520267.5
    Conserved Domains (1) summary
    NF038329
    Location:358 → 629
    gly_rich_SclB; LPXTG-anchored collagen-like adhesin Scl2/SclB

  13. NM_080800.4 → NP_542990.3  collagen alpha-1(XIII) chain isoform 11

    Status: REVIEWED

    Description
    Transcript Variant: This variant (11) does not contain exon 12 and 33, based on the exon numbering used in PMID: 1894651. Isoform 11 lacks two internal segments, compared to isoform 1.
    Source sequence(s)
    AC024601, AC025426, AL138925
    Consensus CDS
    CCDS44425.2
    UniProtKB/Swiss-Prot
    Q5TAT6
    Related
    ENSP00000428342.1, ENST00000522165.5
    Conserved Domains (1) summary
    pfam01391
    Location:594 → 651
    Collagen; Collagen triple helix repeat (20 copies)

  14. NM_080801.4 → NP_542991.3  collagen alpha-1(XIII) chain isoform 5

    Status: REVIEWED

    Description
    Transcript Variant: This variant (5) does not contain exon 13, based on the exon numbering used in PMID: 1894651. Isoform 5 lacks an internal 22 aa compared to isoform 1.
    Source sequence(s)
    AC024601, AC025426, AL138925
    Consensus CDS
    CCDS44424.2
    UniProtKB/Swiss-Prot
    Q5TAT6
    Related
    ENSP00000346553.3, ENST00000354547.7
    Conserved Domains (1) summary
    pfam01391
    Location:621 → 680
    Collagen; Collagen triple helix repeat (20 copies)

  15. NM_080802.4 → NP_542992.3  collagen alpha-1(XIII) chain isoform 15

    Status: REVIEWED

    Description
    Transcript Variant: This variant (15) does not contain exons 13, 29, and 33, based on the exon numbering used in PMID: 1894651. Isoform 15 lacks three internal segments, compared to isoform 1.
    Source sequence(s)
    AC024601, AC025426, AL138925
    Consensus CDS
    CCDS44423.2
    UniProtKB/Swiss-Prot
    Q5TAT6
    Related
    ENSP00000430061.1, ENST00000517713.5
    Conserved Domains (1) summary
    pfam01391
    Location:576 → 633
    Collagen; Collagen triple helix repeat (20 copies)

  16. NM_080805.4 → NP_542995.3  collagen alpha-1(XIII) chain isoform 19

    Status: REVIEWED

    Description
    Transcript Variant: This variant (19) does not contain exons 4, 5, 13, 29, 33, and 37, based on the exon numbering used in PMID: 1894651. Isoform 19 lacks five internal segments, compared to isoform 1.
    Source sequence(s)
    AC024601, AC025426, AL138925
    Consensus CDS
    CCDS44428.2
    UniProtKB/Swiss-Prot
    Q5TAT6
    Related
    ENSP00000430173.1, ENST00000520133.5
    Conserved Domains (1) summary
    pfam01391
    Location:547 → 603
    Collagen; Collagen triple helix repeat (20 copies)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000010.11 Reference GRCh38.p14 Primary Assembly

    Range
    69801906..69959144
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047424600.1 → XP_047280556.1  collagen alpha-1(XIII) chain isoform X2

  2. XM_011539294.4 → XP_011537596.1  collagen alpha-1(XIII) chain isoform X1

    Conserved Domains (1) summary
    pfam01391
    Location:633 → 692
    Collagen; Collagen triple helix repeat (20 copies)

  3. XM_047424601.1 → XP_047280557.1  collagen alpha-1(XIII) chain isoform X3

  4. XM_047424609.1 → XP_047280565.1  collagen alpha-1(XIII) chain isoform X13

  5. XM_047424604.1 → XP_047280560.1  collagen alpha-1(XIII) chain isoform X5

  6. XM_047424605.1 → XP_047280561.1  collagen alpha-1(XIII) chain isoform X7

  7. XM_047424612.1 → XP_047280568.1  collagen alpha-1(XIII) chain isoform X17

  8. XM_017015681.3 → XP_016871170.1  collagen alpha-1(XIII) chain isoform X6

  9. XM_047424606.1 → XP_047280562.1  collagen alpha-1(XIII) chain isoform X8

  10. XM_017015689.3 → XP_016871178.1  collagen alpha-1(XIII) chain isoform X18

  11. XM_047424610.1 → XP_047280566.1  collagen alpha-1(XIII) chain isoform X14

  12. XM_017015691.3 → XP_016871180.1  collagen alpha-1(XIII) chain isoform X21

  13. XM_017015685.3 → XP_016871174.1  collagen alpha-1(XIII) chain isoform X12

  14. XM_017015686.3 → XP_016871175.1  collagen alpha-1(XIII) chain isoform X16

    Related
    ENSP00000501125.2, ENST00000673641.2

  15. XM_017015693.3 → XP_016871182.1  collagen alpha-1(XIII) chain isoform X22

  16. XM_047424613.1 → XP_047280569.1  collagen alpha-1(XIII) chain isoform X19

  17. XM_047424616.1 → XP_047280572.1  collagen alpha-1(XIII) chain isoform X24

  18. XM_047424608.1 → XP_047280564.1  collagen alpha-1(XIII) chain isoform X10

  19. XM_017015684.3 → XP_016871173.1  collagen alpha-1(XIII) chain isoform X11

  20. XM_047424602.1 → XP_047280558.1  collagen alpha-1(XIII) chain isoform X4

  21. XM_047424607.1 → XP_047280563.1  collagen alpha-1(XIII) chain isoform X9

  22. XM_047424618.1 → XP_047280574.1  collagen alpha-1(XIII) chain isoform X26

    Related
    ENSP00000501058.1, ENST00000673842.1

  23. XM_047424611.1 → XP_047280567.1  collagen alpha-1(XIII) chain isoform X15

  24. XM_047424614.1 → XP_047280570.1  collagen alpha-1(XIII) chain isoform X20

  25. XM_047424615.1 → XP_047280571.1  collagen alpha-1(XIII) chain isoform X23

  26. XM_047424617.1 → XP_047280573.1  collagen alpha-1(XIII) chain isoform X25

  27. XM_047424619.1 → XP_047280575.1  collagen alpha-1(XIII) chain isoform X27

    Related
    ENSP00000500966.2, ENST00000673957.2

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060934.1 Alternate T2T-CHM13v2.0

    Range
    70670103..70827646
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054364797.1 → XP_054220772.1  collagen alpha-1(XIII) chain isoform X2

  2. XM_054364796.1 → XP_054220771.1  collagen alpha-1(XIII) chain isoform X1

  3. XM_054364798.1 → XP_054220773.1  collagen alpha-1(XIII) chain isoform X3

  4. XM_054364806.1 → XP_054220781.1  collagen alpha-1(XIII) chain isoform X13

  5. XM_054364799.1 → XP_054220774.1  collagen alpha-1(XIII) chain isoform X5

  6. XM_054364800.1 → XP_054220775.1  collagen alpha-1(XIII) chain isoform X7

  7. XM_054364810.1 → XP_054220785.1  collagen alpha-1(XIII) chain isoform X17

  8. XM_054364801.1 → XP_054220776.1  collagen alpha-1(XIII) chain isoform X6

  9. XM_054364802.1 → XP_054220777.1  collagen alpha-1(XIII) chain isoform X8

  10. XM_054364811.1 → XP_054220786.1  collagen alpha-1(XIII) chain isoform X18

  11. XM_054364807.1 → XP_054220782.1  collagen alpha-1(XIII) chain isoform X14

  12. XM_054364814.1 → XP_054220789.1  collagen alpha-1(XIII) chain isoform X21

  13. XM_054364805.1 → XP_054220780.1  collagen alpha-1(XIII) chain isoform X12

  14. XM_054364809.1 → XP_054220784.1  collagen alpha-1(XIII) chain isoform X16

  15. XM_054364815.1 → XP_054220790.1  collagen alpha-1(XIII) chain isoform X22

  16. XM_054364812.1 → XP_054220787.1  collagen alpha-1(XIII) chain isoform X19

  17. XM_054364817.1 → XP_054220792.1  collagen alpha-1(XIII) chain isoform X24

  18. XM_054364804.1 → XP_054220779.1  collagen alpha-1(XIII) chain isoform X10

  19. XM_054364803.1 → XP_054220778.1  collagen alpha-1(XIII) chain isoform X9

  20. XM_054364819.1 → XP_054220794.1  collagen alpha-1(XIII) chain isoform X26

  21. XM_054364808.1 → XP_054220783.1  collagen alpha-1(XIII) chain isoform X15

  22. XM_054364813.1 → XP_054220788.1  collagen alpha-1(XIII) chain isoform X20

  23. XM_054364816.1 → XP_054220791.1  collagen alpha-1(XIII) chain isoform X23

  24. XM_054364818.1 → XP_054220793.1  collagen alpha-1(XIII) chain isoform X25

  25. XM_054364820.1 → XP_054220795.1  collagen alpha-1(XIII) chain isoform X27

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_005203.3: Suppressed sequence

    Description
    NM_005203.3: This RefSeq was permanently suppressed because currently there is not sufficient full-length data to support this transcript.

  2. NM_080799.2: Suppressed sequence

    Description
    NM_080799.2: This RefSeq was permanently suppressed because currently there is not sufficient full-length data to support this transcript.

  3. NM_080803.2: Suppressed sequence

    Description
    NM_080803.2: This RefSeq was permanently suppressed because currently there is not sufficient full-length data to support this transcript.

  4. NM_080804.2: Suppressed sequence

    Description
    NM_080804.2: This RefSeq was permanently suppressed because currently there is not sufficient full-length data to support this transcript.

  5. NM_080806.2: Suppressed sequence

    Description
    NM_080806.2: This RefSeq was temporarily suppressed because currently there is not sufficient full-length data to support this transcript.

  6. NM_080807.2: Suppressed sequence

    Description
    NM_080807.2: This RefSeq was temporarily suppressed because currently there is not sufficient full-length data to support this transcript.

  7. NM_080808.2: Suppressed sequence

    Description
    NM_080808.2: This RefSeq was temporarily suppressed because currently there is not sufficient full-length data to support this transcript.

  8. NM_080809.2: Suppressed sequence

    Description
    NM_080809.2: This RefSeq was temporarily suppressed because currently there is not sufficient full-length data to support this transcript.

  9. NM_080810.2: Suppressed sequence

    Description
    NM_080810.2: This RefSeq was temporarily suppressed because currently there is not sufficient full-length data to support this transcript.

  10. NM_080811.2: Suppressed sequence

    Description
    NM_080811.2: This RefSeq was temporarily suppressed because currently there is not sufficient full-length data to support this transcript.

  11. NM_080812.2: Suppressed sequence

    Description
    NM_080812.2: This RefSeq was temporarily suppressed because currently there is not sufficient full-length data to support this transcript.

  12. NM_080813.2: Suppressed sequence

    Description
    NM_080813.2: This RefSeq was temporarily suppressed because currently there is not sufficient full-length data to support this transcript.

  13. NM_080814.2: Suppressed sequence

    Description
    NM_080814.2: This RefSeq was temporarily suppressed because currently there is not sufficient full-length data to support this transcript.

  14. NM_080815.2: Suppressed sequence

    Description
    NM_080815.2: This RefSeq was temporarily suppressed because currently there is not sufficient full-length data to support this transcript.
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q5TAT6.1 GenPept UniProtKB/Swiss-Prot:Q5TAT6

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