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LOC131337641 STARR-seq mESC enhancer starr_06929 [ Mus musculus (house mouse) ]

Gene ID: 131337641, updated on 10-Feb-2024

Summary

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Gene symbol
LOC131337641
Gene description
STARR-seq mESC enhancer starr_06929
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
This genomic region represents an enhancer that was validated by the STARR-seq (self-transcribing active regulatory region sequencing) reporter assay in ground-state (2iL) mouse embryonic stem cells, where it was defined as a C2 class enhancer that does not overlap an active chromatin signature. [provided by RefSeq, Jul 2023]
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Genomic context

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See LOC131337641 in Genome Data Viewer
Location:
chromosome: 3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (9856131..9857545)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene zinc finger protein 704 Neighboring gene predicted gene, 54189 Neighboring gene STARR-seq mESC enhancer starr_06908 Neighboring gene STARR-seq mESC enhancer starr_06911 Neighboring gene STARR-seq mESC enhancer starr_06917 Neighboring gene CapStarr-seq enhancer MGSCv37_chr3:9633164-9633347 Neighboring gene CapStarr-seq enhancer MGSCv37_chr3:9633637-9633868 Neighboring gene STARR-seq mESC enhancer starr_06923 Neighboring gene STARR-seq mESC enhancer starr_06924 Neighboring gene STARR-seq mESC enhancer starr_06927 Neighboring gene CapStarr-seq enhancer MGSCv37_chr3:9662928-9663081 Neighboring gene STARR-positive B cell enhancer mm9_chr3:9677144-9677445 Neighboring gene predicted gene, 33169 Neighboring gene stromal cell derived factor 2 pseudogene Neighboring gene phosphoprotein associated with glycosphingolipid microdomains 1 Neighboring gene STARR-seq mESC enhancer starr_06930 Neighboring gene CapStarr-seq enhancer MGSCv37_chr3:9865803-9866092 Neighboring gene CapStarr-seq enhancer MGSCv37_chr3:9887341-9887494 Neighboring gene STARR-positive B cell enhancer mm9_chr3:9892992-9893293 Neighboring gene predicted gene, 33273 Neighboring gene peptidylprolyl isomerase D (cyclophilin D) pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. STARR-seq identifies active, chromatin-masked, and dormant enhancers in pluripotent mouse embryonic stem cells. Peng T, et al. Genome Biol, 2020 Sep 10. PMID 32912294, Free PMC Article

GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_207202.1 

    Range
    101..1515
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    9856131..9857545
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version