U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC131339780 STARR-seq mESC enhancer starr_10484 [ Mus musculus (house mouse) ]

Gene ID: 131339780, updated on 10-Feb-2024

Summary

Go to the top of the page Help
Gene symbol
LOC131339780
Gene description
STARR-seq mESC enhancer starr_10484
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
This genomic region represents an enhancer that was validated by the STARR-seq (self-transcribing active regulatory region sequencing) reporter assay in ground-state (2iL) and metastable (SL) mouse embryonic stem cells, where it was defined as a C1 class enhancer that overlaps an active chromatin signature. [provided by RefSeq, Jul 2023]
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC131339780 in Genome Data Viewer
Location:
chromosome: 4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (66692642..66694256)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 25480 Neighboring gene STARR-seq mESC enhancer starr_10478 Neighboring gene STARR-seq mESC enhancer starr_10480 Neighboring gene STARR-seq mESC enhancer starr_10481 Neighboring gene STARR-seq mESC enhancer starr_10482 Neighboring gene STARR-seq mESC enhancer starr_10483 Neighboring gene predicted gene 11220 Neighboring gene STARR-positive B cell enhancer ABC_E4634 Neighboring gene VISTA enhancer mm279 Neighboring gene STARR-seq mESC enhancer starr_10485 Neighboring gene STARR-seq mESC enhancer starr_10486 Neighboring gene STARR-seq mESC enhancer starr_10487 Neighboring gene toll-like receptor 4 Neighboring gene STARR-seq mESC enhancer starr_10488 Neighboring gene STARR-seq mESC enhancer starr_10489 Neighboring gene STARR-seq mESC enhancer starr_10490 Neighboring gene high mobility group box 1, related sequence 18

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. STARR-seq identifies active, chromatin-masked, and dormant enhancers in pluripotent mouse embryonic stem cells. Peng T, et al. Genome Biol, 2020 Sep 10. PMID 32912294, Free PMC Article

GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_209341.1 

    Range
    101..1715
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    66692642..66694256
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version