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LOC131339967 STARR-seq mESC enhancer starr_10751 [ Mus musculus (house mouse) ]

Gene ID: 131339967, updated on 10-Feb-2024

Summary

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Gene symbol
LOC131339967
Gene description
STARR-seq mESC enhancer starr_10751
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
This genomic region represents an enhancer that was validated by the STARR-seq (self-transcribing active regulatory region sequencing) reporter assay in ground-state (2iL) and metastable (SL) mouse embryonic stem cells, where it was defined as a C1 class enhancer that overlaps an active chromatin signature. [provided by RefSeq, Jul 2023]
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Genomic context

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See LOC131339967 in Genome Data Viewer
Location:
chromosome: 4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (90122770..90124872)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_10744 Neighboring gene doublesex and mab-3 related transcription factor like family A1 Neighboring gene STARR-seq mESC enhancer starr_10745 Neighboring gene STARR-positive B cell enhancer mm9_chr4:89542396-89542697 Neighboring gene STARR-seq mESC enhancer starr_10746 Neighboring gene STARR-seq mESC enhancer starr_10748 Neighboring gene STARR-seq mESC enhancer starr_10749 Neighboring gene STARR-seq mESC enhancer starr_10750 Neighboring gene STARR-seq mESC enhancer starr_10752 Neighboring gene STARR-seq mESC enhancer starr_10753 Neighboring gene STARR-seq mESC enhancer starr_10754 Neighboring gene zinc finger protein 352 Neighboring gene STARR-seq mESC enhancer starr_10755 Neighboring gene STARR-seq mESC enhancer starr_10756 Neighboring gene STARR-seq mESC enhancer starr_10757 Neighboring gene zinc finger protein 352 pseudogene Neighboring gene glyceraldehyde-3-phosphate dehydrogenase pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. STARR-seq identifies active, chromatin-masked, and dormant enhancers in pluripotent mouse embryonic stem cells. Peng T, et al. Genome Biol, 2020 Sep 10. PMID 32912294, Free PMC Article

GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_209528.1 

    Range
    101..2203
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    90122770..90124872
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version