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LOC131341439 STARR-seq mESC enhancer starr_13621 [ Mus musculus (house mouse) ]

Gene ID: 131341439, updated on 10-Feb-2024

Summary

Gene symbol
LOC131341439
Gene description
STARR-seq mESC enhancer starr_13621
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
This genomic region represents an enhancer that was validated by the STARR-seq (self-transcribing active regulatory region sequencing) reporter assay in ground-state (2iL) and metastable (SL) mouse embryonic stem cells, where it was defined as a C2 class enhancer that does not overlap an active chromatin signature. [provided by RefSeq, Jul 2023]
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Genomic context

See LOC131341439 in Genome Data Viewer
Location:
chromosome: 5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (92045379..92046838)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene peptidyl-prolyl cis-trans isomerase A pseudogene 5_892.1 Neighboring gene predicted gene, 36303 Neighboring gene predicted gene, 36357 Neighboring gene STARR-seq mESC enhancer starr_13622 Neighboring gene ring finger and CHY zinc finger domain containing 1 Neighboring gene STARR-seq mESC enhancer starr_13623 Neighboring gene THAP domain containing 6 Neighboring gene STARR-seq mESC enhancer starr_13624 Neighboring gene odontogenesis associated phosphoprotein

Genomic regions, transcripts, and products

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_210998.1 

    Range
    101..1560
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    92045379..92046838
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)