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LOC131371347 STARR-seq mESC enhancer starr_15154 [ Mus musculus (house mouse) ]

Gene ID: 131371347, updated on 10-Feb-2024

Summary

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Gene symbol
LOC131371347
Gene description
STARR-seq mESC enhancer starr_15154
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
This genomic region represents an enhancer that was validated by the STARR-seq (self-transcribing active regulatory region sequencing) reporter assay in ground-state (2iL) and metastable (SL) mouse embryonic stem cells, where it was defined as a C2 class enhancer that does not overlap an active chromatin signature. [provided by RefSeq, Jul 2023]
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Genomic context

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See LOC131371347 in Genome Data Viewer
Location:
chromosome: 6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (11230604..11232073)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_15149 Neighboring gene eukaryotic translation initiation factor 5B pseudogene Neighboring gene EST AA545190 Neighboring gene STARR-seq mESC enhancer starr_15152 Neighboring gene STARR-seq mESC enhancer starr_15153 Neighboring gene STARR-seq mESC enhancer starr_15155 Neighboring gene STARR-seq mESC enhancer starr_15156 Neighboring gene STARR-seq mESC enhancer starr_15157 Neighboring gene STARR-seq mESC enhancer starr_15158 Neighboring gene STARR-seq mESC enhancer starr_15159 Neighboring gene STARR-seq mESC enhancer starr_15161 Neighboring gene STARR-seq mESC enhancer starr_15162 Neighboring gene STARR-seq mESC enhancer starr_15163 Neighboring gene STARR-seq mESC enhancer starr_15164 Neighboring gene STARR-seq mESC enhancer starr_15166 Neighboring gene Ndufa4, mitochondrial complex associated Neighboring gene PHD finger protein 14 Neighboring gene STARR-seq mESC enhancer starr_15168 Neighboring gene STARR-seq mESC enhancer starr_15169 Neighboring gene mitochondrial ribosomal protein L32 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. STARR-seq identifies active, chromatin-masked, and dormant enhancers in pluripotent mouse embryonic stem cells. Peng T, et al. Genome Biol, 2020 Sep 10. PMID 32912294, Free PMC Article

GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_211641.1 

    Range
    101..1570
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    11230604..11232073
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version