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LOC131376834 STARR-seq mESC enhancer starr_26226 [ Mus musculus (house mouse) ]

Gene ID: 131376834, updated on 10-Feb-2024

Summary

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Gene symbol
LOC131376834
Gene description
STARR-seq mESC enhancer starr_26226
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
This genomic region represents an enhancer that was validated by the STARR-seq (self-transcribing active regulatory region sequencing) reporter assay in ground-state (2iL) mouse embryonic stem cells, where it was defined as a C2 class enhancer that does not overlap an active chromatin signature. [provided by RefSeq, Jul 2023]
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Genomic context

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See LOC131376834 in Genome Data Viewer
Location:
chromosome: 10
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (32099194..32100379)

Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_26218 Neighboring gene STARR-seq mESC enhancer starr_26219 Neighboring gene STARR-seq mESC enhancer starr_26220 Neighboring gene STARR-seq mESC enhancer starr_26221 Neighboring gene 3-phosphoglycerate dehydrogenase pseudogene Neighboring gene Na+/K+ transporting ATPase interacting 2 Neighboring gene STARR-seq mESC enhancer starr_26222 Neighboring gene STARR-seq mESC enhancer starr_26223 Neighboring gene STARR-seq mESC enhancer starr_26224 Neighboring gene STARR-seq mESC enhancer starr_26225 Neighboring gene Braf transforming gene pseudogene Neighboring gene STARR-seq mESC enhancer starr_26227 Neighboring gene Smad nuclear interacting protein 1 pseudogene Neighboring gene STARR-seq mESC enhancer starr_26228 Neighboring gene STARR-seq mESC enhancer starr_26229 Neighboring gene STARR-seq mESC enhancer starr_26230 Neighboring gene STARR-seq mESC enhancer starr_26231 Neighboring gene STARR-seq mESC enhancer starr_26233 Neighboring gene STARR-seq mESC enhancer starr_26234 Neighboring gene STARR-seq mESC enhancer starr_26235 Neighboring gene STARR-seq mESC enhancer starr_26236 Neighboring gene STARR-seq mESC enhancer starr_26237 Neighboring gene STARR-seq mESC enhancer starr_26238 Neighboring gene STARR-seq mESC enhancer starr_26239 Neighboring gene RIKEN cDNA D830005E20 gene Neighboring gene triadin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. STARR-seq identifies active, chromatin-masked, and dormant enhancers in pluripotent mouse embryonic stem cells. Peng T, et al. Genome Biol, 2020 Sep 10. PMID 32912294, Free PMC Article

GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_217128.1 

    Range
    101..1286
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000076.7 Reference GRCm39 C57BL/6J

    Range
    32099194..32100379
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version