U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC131379001 STARR-seq mESC enhancer starr_29802 [ Mus musculus (house mouse) ]

Gene ID: 131379001, updated on 10-Feb-2024

Summary

Gene symbol
LOC131379001
Gene description
STARR-seq mESC enhancer starr_29802
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
This genomic region represents an enhancer that was validated by the STARR-seq (self-transcribing active regulatory region sequencing) reporter assay in ground-state (2iL) and metastable (SL) mouse embryonic stem cells, where it was defined as a C2 class enhancer that does not overlap an active chromatin signature. [provided by RefSeq, Jul 2023]
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See LOC131379001 in Genome Data Viewer
Location:
chromosome: 11
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (67631147..67632284)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene growth arrest specific 7 Neighboring gene STARR-positive B cell enhancer ABC_E1827 Neighboring gene predicted gene 12301 Neighboring gene glucagon-like peptide 2 receptor Neighboring gene recoverin Neighboring gene GSG1-like 2 Neighboring gene dehydrogenase/reductase 7C

Genomic regions, transcripts, and products

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_218934.1 

    Range
    101..1238
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    67631147..67632284
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)