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LOC131387317 STARR-seq mESC enhancer starr_38238 [ Mus musculus (house mouse) ]

Gene ID: 131387317, updated on 10-Feb-2024

Summary

Gene symbol
LOC131387317
Gene description
STARR-seq mESC enhancer starr_38238
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
This genomic region represents an enhancer that was validated by the STARR-seq (self-transcribing active regulatory region sequencing) reporter assay in ground-state (2iL) and metastable (SL) mouse embryonic stem cells, where it was defined as a C1 class enhancer that overlaps an active chromatin signature. [provided by RefSeq, Jul 2023]
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Genomic context

See LOC131387317 in Genome Data Viewer
Location:
chromosome: 15
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (27967646..27970123)

Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 46506 Neighboring gene STARR-seq mESC enhancer starr_38229 Neighboring gene OTU deubiquitinase with linear linkage specificity like Neighboring gene triple functional domain (PTPRF interacting) Neighboring gene CapStarr-seq enhancer MGSCv37_chr15:27725815-27725968 Neighboring gene STARR-positive B cell enhancer ABC_E11588 Neighboring gene STARR-seq mESC enhancer starr_38230 Neighboring gene STARR-seq mESC enhancer starr_38231 Neighboring gene STARR-seq mESC enhancer starr_38233 Neighboring gene STARR-positive B cell enhancer ABC_E5471 Neighboring gene STARR-seq mESC enhancer starr_38236 Neighboring gene STARR-seq mESC enhancer starr_38239 Neighboring gene STARR-seq mESC enhancer starr_38240 Neighboring gene STARR-seq mESC enhancer starr_38241 Neighboring gene predicted gene, 29975 Neighboring gene STARR-seq mESC enhancer starr_38243 Neighboring gene STARR-seq mESC enhancer starr_38244 Neighboring gene predicted gene, 19883 Neighboring gene predicted gene, 31458

Genomic regions, transcripts, and products

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_223207.1 

    Range
    101..2578
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000081.7 Reference GRCm39 C57BL/6J

    Range
    27967646..27970123
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)