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LOC131387449 STARR-seq mESC enhancer starr_38487 [ Mus musculus (house mouse) ]

Gene ID: 131387449, updated on 10-Feb-2024

Summary

Gene symbol
LOC131387449
Gene description
STARR-seq mESC enhancer starr_38487
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
This genomic region represents an enhancer that was validated by the STARR-seq (self-transcribing active regulatory region sequencing) reporter assay in ground-state (2iL) and metastable (SL) mouse embryonic stem cells, where it was defined as a C1 class enhancer that overlaps an active chromatin signature. [provided by RefSeq, Jul 2023]
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Genomic context

See LOC131387449 in Genome Data Viewer
Location:
chromosome: 15
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (39630858..39633415)

Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene regulating synaptic membrane exocytosis 2 Neighboring gene U6 snRNA-associated Sm-like protein LSm3 pseudogene Neighboring gene STARR-seq mESC enhancer starr_38483 Neighboring gene STARR-seq mESC enhancer starr_38490 Neighboring gene STARR-seq mESC enhancer starr_38492 Neighboring gene dendrocyte expressed seven transmembrane protein Neighboring gene dihydropyrimidinase Neighboring gene predicted gene 16291 Neighboring gene predicted gene, 53879

Genomic regions, transcripts, and products

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_223339.1 

    Range
    101..2658
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000081.7 Reference GRCm39 C57BL/6J

    Range
    39630858..39633415
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)