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LOC131388815 STARR-seq mESC enhancer starr_41272 [ Mus musculus (house mouse) ]

Gene ID: 131388815, updated on 10-Feb-2024

Summary

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Gene symbol
LOC131388815
Gene description
STARR-seq mESC enhancer starr_41272
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
This genomic region represents an enhancer that was validated by the STARR-seq (self-transcribing active regulatory region sequencing) reporter assay in ground-state (2iL) and metastable (SL) mouse embryonic stem cells, where it was defined as a C2 class enhancer that does not overlap an active chromatin signature. [provided by RefSeq, Jul 2023]
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Genomic context

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See LOC131388815 in Genome Data Viewer
Location:
chromosome: 16
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (75832328..75833372)

Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene SAM domain, SH3 domain and nuclear localization signals, 1 Neighboring gene STARR-positive B cell enhancer ABC_E8643 Neighboring gene STARR-positive B cell enhancer ABC_E9430 Neighboring gene STARR-positive B cell enhancer mm9_chr16:75908045-75908345 Neighboring gene STARR-positive B cell enhancer mm9_chr16:75909418-75909719 Neighboring gene STARR-positive B cell enhancer mm9_chr16:75929785-75930086 Neighboring gene STARR-seq mESC enhancer starr_41270 Neighboring gene STARR-seq mESC enhancer starr_41271 Neighboring gene predicted gene 15555 Neighboring gene STARR-positive B cell enhancer ABC_E8645 Neighboring gene STARR-seq mESC enhancer starr_41274 Neighboring gene RIKEN cDNA 4930578N18 gene Neighboring gene STARR-seq mESC enhancer starr_41275 Neighboring gene predicted gene, 22268 Neighboring gene predicted gene, 53928

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. STARR-seq identifies active, chromatin-masked, and dormant enhancers in pluripotent mouse embryonic stem cells. Peng T, et al. Genome Biol, 2020 Sep 10. PMID 32912294, Free PMC Article

GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_224705.1 

    Range
    101..1145
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000082.7 Reference GRCm39 C57BL/6J

    Range
    75832328..75833372
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version