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LOC132410487 STARR-positive B cell enhancer mm9_chr4:145482093-145482393 [ Mus musculus (house mouse) ]

Gene ID: 132410487, updated on 10-Feb-2024

Summary

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Gene symbol
LOC132410487
Gene description
STARR-positive B cell enhancer mm9_chr4:145482093-145482393
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
This genomic region was identified as a putative B cell regulatory element by FAIRE-seq (formaldehyde-assisted isolation of regulatory elements sequencing), and was validated as an enhancer by STARR-seq (self-transcribing active regulatory region sequencing) in lipopolysaccharide-activated mouse splenic B cells. [provided by RefSeq, Oct 2023]
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Genomic context

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See LOC132410487 in Genome Data Viewer
Location:
chromosome: 4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (145618760..145619060)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_12036 Neighboring gene STARR-positive B cell enhancer mm9_chr4:145446019-145446319 Neighboring gene STARR-seq mESC enhancer starr_12037 Neighboring gene STARR-seq mESC enhancer starr_12038 Neighboring gene carnitine deficiency-associated gene expressed in ventricle 3 pseudogene Neighboring gene STARR-seq mESC enhancer starr_12039 Neighboring gene 60S acidic ribosomal protein P1 pseudogene Neighboring gene STARR-seq mESC enhancer starr_12040 Neighboring gene STARR-positive B cell enhancer mm9_chr4:145479925-145480225 Neighboring gene STARR-positive B cell enhancer mm9_chr4:145483669-145483970 Neighboring gene STARR-positive B cell enhancer mm9_chr4:146017850-146018151 Neighboring gene carnitine deficiency-associated gene expressed in ventricle 3 pseudogene Neighboring gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene regulatory networks STARR-ing B cells. Martínez de Paz A, et al. Nat Immunol, 2020 Feb. PMID 31873293, Free PMC Article
  2. Charting the cis-regulome of activated B cells by coupling structural and functional genomics. Chaudhri VK, et al. Nat Immunol, 2020 Feb. PMID 31873292

GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_234345.1 

    Range
    101..401
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    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    145618760..145619060
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version