U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC132441021 STARR-positive B cell enhancer ABC_E2317 [ Mus musculus (house mouse) ]

Gene ID: 132441021, updated on 10-Feb-2024

Summary

Go to the top of the page Help
Gene symbol
LOC132441021
Gene description
STARR-positive B cell enhancer ABC_E2317
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
This genomic region was identified as a putative B cell regulatory element by FAIRE-seq (formaldehyde-assisted isolation of regulatory elements sequencing), and was validated as an enhancer by STARR-seq (self-transcribing active regulatory region sequencing) in lipopolysaccharide-activated mouse splenic B cells. [provided by RefSeq, Oct 2023]
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC132441021 in Genome Data Viewer
Location:
chromosome: 10
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 10 NC_000076.7 (19467463..19467764)

Chromosome 10 - NC_000076.7Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr10:19093659-19093906 Neighboring gene oligodendrocyte transcription factor 3 Neighboring gene STARR-seq mESC enhancer starr_25934 Neighboring gene STARR-seq mESC enhancer starr_25935 Neighboring gene STARR-seq mESC enhancer starr_25937 Neighboring gene predicted gene, 33104 Neighboring gene STARR-positive B cell enhancer mm9_chr10:19238623-19238923 Neighboring gene STARR-seq mESC enhancer starr_25938 Neighboring gene CapStarr-seq enhancer MGSCv37_chr10:19303894-19304196 Neighboring gene interferon gamma receptor 1 Neighboring gene STARR-seq mESC enhancer starr_25939 Neighboring gene interleukin 22 receptor, alpha 2 Neighboring gene predicted gene, 33332 Neighboring gene CapStarr-seq enhancer MGSCv37_chr10:19411574-19411868 Neighboring gene interleukin 20 receptor, alpha

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Gene regulatory networks STARR-ing B cells. Martínez de Paz A, et al. Nat Immunol, 2020 Feb. PMID 31873293, Free PMC Article
  2. Charting the cis-regulome of activated B cells by coupling structural and functional genomics. Chaudhri VK, et al. Nat Immunol, 2020 Feb. PMID 31873292

GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_237443.1 

    Range
    101..402
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000076.7 Reference GRCm39 C57BL/6J

    Range
    19467463..19467764
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version