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LOC132443150 STARR-positive B cell enhancer ABC_E7272 [ Mus musculus (house mouse) ]

Gene ID: 132443150, updated on 10-Feb-2024

Summary

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Gene symbol
LOC132443150
Gene description
STARR-positive B cell enhancer ABC_E7272
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
This genomic region was identified as a putative B cell regulatory element by FAIRE-seq (formaldehyde-assisted isolation of regulatory elements sequencing), and was validated as an enhancer by STARR-seq (self-transcribing active regulatory region sequencing) in lipopolysaccharide-activated mouse splenic B cells. [provided by RefSeq, Oct 2023]
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Genomic context

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See LOC132443150 in Genome Data Viewer
Location:
chromosome: 13
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (102830566..102830867)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_35504 Neighboring gene zinc finger and SCAN domain-containing protein 10 pseudogene Neighboring gene STARR-seq mESC enhancer starr_35506 Neighboring gene STARR-positive B cell enhancer mm9_chr13:103468634-103468935 Neighboring gene STARR-positive B cell enhancer ABC_E7271 Neighboring gene STARR-positive B cell enhancer ABC_E1887 Neighboring gene STARR-positive B cell enhancer ABC_E10811 Neighboring gene STARR-seq mESC enhancer starr_35508 Neighboring gene predicted gene, 41046 Neighboring gene STARR-seq mESC enhancer starr_35509 Neighboring gene STARR-positive B cell enhancer ABC_E3097 Neighboring gene RIKEN cDNA 1700099I09 gene Neighboring gene CD180 antigen Neighboring gene microtubule associated serine/threonine kinase family member 4 Neighboring gene predicted gene 17160

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene regulatory networks STARR-ing B cells. Martínez de Paz A, et al. Nat Immunol, 2020 Feb. PMID 31873293, Free PMC Article
  2. Charting the cis-regulome of activated B cells by coupling structural and functional genomics. Chaudhri VK, et al. Nat Immunol, 2020 Feb. PMID 31873292

GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_239572.1 

    Range
    101..402
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    102830566..102830867
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version