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LOC132445365 STARR-positive B cell enhancer mm9_chrX:92173712-92174012 [ Mus musculus (house mouse) ]

Gene ID: 132445365, updated on 10-Feb-2024

Summary

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Gene symbol
LOC132445365
Gene description
STARR-positive B cell enhancer mm9_chrX:92173712-92174012
Gene type
biological region
Feature type(s)
regulatory: enhancer
RefSeq status
REVIEWED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
This genomic region was identified as a putative B cell regulatory element by FAIRE-seq (formaldehyde-assisted isolation of regulatory elements sequencing), and was validated as an enhancer by STARR-seq (self-transcribing active regulatory region sequencing) in lipopolysaccharide-activated mouse splenic B cells. [provided by RefSeq, Oct 2023]
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Genomic context

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See LOC132445365 in Genome Data Viewer
Location:
chromosome: X
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (94021979..94022279)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene zinc finger, X-linked, duplicated A Neighboring gene predicted gene, 54087 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92123270-92123571 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92127397-92127698 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92128436-92128737 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92128771-92129071 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92130222-92130523 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92131186-92131487 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92132186-92132487 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92136714-92137015 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92137671-92137972 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92138430-92138731 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92138811-92139112 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92139803-92140104 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92142094-92142394 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92142861-92143162 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92145272-92145572 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92146544-92146845 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92146901-92147202 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92147877-92148177 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92150970-92151271 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92152080-92152381 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92152746-92153047 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92153049-92153349 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92156826-92157127 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92157184-92157485 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92158408-92158708 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92159204-92159505 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92159763-92160064 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92160302-92160603 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92160986-92161287 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92162208-92162509 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92162970-92163271 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92165507-92165808 Neighboring gene STARR-positive B cell enhancer mm9_chrX:92167787-92168088 Neighboring gene germ cell-less homolog 1 pseudogene Neighboring gene STARR-seq mESC enhancer starr_47564 Neighboring gene spindlin family, member 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene regulatory networks STARR-ing B cells. Martínez de Paz A, et al. Nat Immunol, 2020 Feb. PMID 31873293, Free PMC Article
  2. Charting the cis-regulome of activated B cells by coupling structural and functional genomics. Chaudhri VK, et al. Nat Immunol, 2020 Feb. PMID 31873292

GeneRIFs: Gene References Into Functions

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_241783.1 

    Range
    101..401
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    94021979..94022279
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version