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PPIAP29 peptidylprolyl isomerase A pseudogene 29 [ Homo sapiens (human) ]

Gene ID: 134997, updated on 10-Dec-2024

Summary

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Official Symbol
PPIAP29provided by HGNC
Official Full Name
peptidylprolyl isomerase A pseudogene 29provided by HGNC
Primary source
HGNC:HGNC:43021
See related
AllianceGenome:HGNC:43021
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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See PPIAP29 in Genome Data Viewer
Location:
6p22.3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (24976377..24977187)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (24841570..24842380)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (24976605..24977415)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene ReSE screen-validated silencer GRCh37_chr6:24821142-24821270 Neighboring gene armadillo like helical domain containing 2 Neighboring gene RHO family interacting cell polarization regulator 2 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:24827169-24827670 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:24827671-24828170 Neighboring gene Sharpr-MPRA regulatory region 11328 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24159 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:24875839-24876775 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:24918137-24918636 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24160 Neighboring gene uncharacterized LOC105374981 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24161 Neighboring gene MT-CO2 pseudogene 33 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:24980966-24981536 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:24985321-24985939 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:25009294-25009446 Neighboring gene uncharacterized LOC102724765 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 24162 Neighboring gene RNA, 7SL, cytoplasmic 334, pseudogene Neighboring gene argininosuccinate synthetase 1 pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Common variants associated with breast cancer in genome-wide association studies are modifiers of breast cancer risk in BRCA1 and BRCA2 mutation carriers. Wang X, et al. Hum Mol Genet, 2010 Jul 15. PMID 20418484, Free PMC Article
  2. Characterization of the human cyclophilin gene and of related processed pseudogenes. Haendler B, et al. Eur J Biochem, 1990 Jul 5. PMID 2197089

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Observational study and genome-wide association study of gene-disease association and gene-gene interaction. (HuGE Navigator)
    Title: Common variants associated with breast cancer in genome-wide association studies are modifiers of breast cancer risk in BRCA1 and BRCA2 mutation carriers.
Submit: New GeneRIF Correction

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

General gene information

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Other Names

  • peptidylprolyl isomerase A (cyclophilin A) pseudogene 29

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_007346.1 

    Range
    101..911
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    24976377..24977187
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    24841570..24842380
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NR_000030.1: Suppressed sequence

    Description
    NR_000030.1: This RefSeq was permanently suppressed because there is insufficient evidence that this pseudogene is transcribed.
Nucleotide Protein
Heading Accession and Version

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