U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC135696809 vinculin-like [ Rhopilema esculentum ]

Gene ID: 135696809, updated on 20-May-2024

Summary

Go to the top of the page Help
Gene symbol
LOC135696809
Gene description
vinculin-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Rhopilema esculentum
Lineage
Eukaryota; Metazoa; Cnidaria; Scyphozoa; Rhizostomeae; Rhizostomatidae; Rhopilema
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC135696809 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
20
Annotation release Status Assembly Chr Location
RS_2024_04 current ASM1307630v1 (GCF_013076305.1) Unplaced Scaffold NW_027019301.1 (2133746..2160329, complement)

NW_027019301.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC135681089 Neighboring gene U6 spliceosomal RNA Neighboring gene msx2-interacting protein-like Neighboring gene uncharacterized LOC135696810 Neighboring gene transcriptional regulator ATRX homolog Neighboring gene tyrosine-protein kinase BAZ1B-like Neighboring gene protein phosphatase inhibitor 2-like

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_027019301 Unplaced Scaffold Reference ASM1307630v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables alpha-catenin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables beta-catenin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in actin cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cell-cell contact zone IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in focal adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
vinculin-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_013076305.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1307630v1 Primary Assembly

Genomic

  1. NW_027019301.1 Reference ASM1307630v1 Primary Assembly

    Range
    2133746..2160329 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_065216328.1 → XP_065072400.1  vinculin-like

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.