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BRCA1 BRCA1 DNA repair associated [ Ambystoma mexicanum (axolotl) ]

Gene ID: 138521410, updated on 20-Nov-2024

Summary

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Gene symbol
BRCA1
Gene description
BRCA1 DNA repair associated
Gene type
protein coding
RefSeq status
MODEL
Organism
Ambystoma mexicanum
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Caudata; Salamandroidea; Ambystomatidae; Ambystoma
Orthologs
human mouse all
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Genomic context

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See BRCA1 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
23
Annotation release Status Assembly Chr Location
RS_2024_10 current UKY_AmexF1_1 (GCF_040938575.1) 13 NC_090938.1 (518658686..519219179, complement)

Chromosome 13 - NC_090938.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC138521408 Neighboring gene uncharacterized LOC138521409 Neighboring gene N-alpha-acetyltransferase 50-like Neighboring gene NBR1 autophagy cargo receptor Neighboring gene transmembrane protein 106A

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_090938.1 Chromosome 13 Reference UKY_AmexF1_1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chordate embryonic development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in dosage compensation by inactivation of X chromosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in double-strand break repair via homologous recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of fatty acid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of BRCA1-A complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of BRCA1-BARD1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
breast cancer type 1 susceptibility protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_040938575.1-RS_2024_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UKY_AmexF1_1 Primary Assembly

Genomic

  1. NC_090938.1 Reference UKY_AmexF1_1 Primary Assembly

    Range
    518658686..519219179 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_069634200.1 → XP_069490301.1  breast cancer type 1 susceptibility protein isoform X2

  2. XM_069634199.1 → XP_069490300.1  breast cancer type 1 susceptibility protein isoform X1

  3. XM_069634201.1 → XP_069490302.1  breast cancer type 1 susceptibility protein isoform X3

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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