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cebpd CCAAT enhancer binding protein delta [ Danio rerio (zebrafish) ]

Gene ID: 140817, updated on 4-Jan-2025

Summary

Official Symbol
cebpdprovided by ZNC
Official Full Name
CCAAT enhancer binding protein deltaprovided by ZNC
Primary source
ZFIN:ZDB-GENE-020111-4
See related
Ensembl:ENSDARG00000087303 AllianceGenome:ZFIN:ZDB-GENE-020111-4
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
c/ebpd; wu:fa99c04; wu:fb61h03
Summary
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within animal organ regeneration; neural tissue regeneration; and regulation of cardiac muscle tissue regeneration. Predicted to be located in nucleus. Is expressed in several structures, including chordo neural hinge; digestive system; periderm; subcutaneous fat; and visceral fat. Orthologous to human CEBPD (CCAAT enhancer binding protein delta). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
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Genomic context

See cebpd in Genome Data Viewer
Location:
chromosome: 24
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 24 NC_007135.7 (35564662..35565873)
105 previous assembly GRCz10 (GCF_000002035.5) 24 NC_007135.6 (35676565..35677776)

Chromosome 24 - NC_007135.7Genomic Context describing neighboring genes Neighboring gene ubiquitin-conjugating enzyme E2 variant 2 Neighboring gene minichromosome maintenance complex component 4 Neighboring gene scaffold protein involved in DNA repair Neighboring gene microtubule-associated protein, RP/EB family, member 2

Genomic regions, transcripts, and products

Pathways from PubChem

General gene information

Gene Ontology Provided by ZFIN

Component Evidence Code Pubs
located_in nucleus  

General protein information

Preferred Names
CCAAT/enhancer-binding protein delta
Names
CCAAT/enhancer binding protein (C/EBP), delta

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_131887.1 → NP_571962.1  CCAAT/enhancer-binding protein delta

    See identical proteins and their annotated locations for NP_571962.1

    Status: PROVISIONAL

    Source sequence(s)
    AF306855
    UniProtKB/TrEMBL
    Q8UVY9
    Related
    ENSDARP00000112432.1, ENSDART00000122734.3
    Conserved Domains (2) summary
    cd14686
    Location:204 → 255
    bZIP; coiled coil [structural motif]
    cl21462
    Location:198 → 262
    bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007135.7 Reference GRCz11 Primary Assembly

    Range
    35564662..35565873
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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