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LINC01931 long intergenic non-protein coding RNA 1931 [ Homo sapiens (human) ]

Gene ID: 150596, updated on 10-Dec-2024

Summary

Official Symbol
LINC01931provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1931provided by HGNC
Primary source
HGNC:HGNC:52743
See related
Ensembl:ENSG00000162947 AllianceGenome:HGNC:52743
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC01931 in Genome Data Viewer
Location:
2q23.3
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (149767506..149859191, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (150217944..150309301, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (150624020..150715705, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene MMADHC divergent transcript Neighboring gene RNA, U6 small nuclear 601, pseudogene Neighboring gene uncharacterized LOC105373680 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr2:150734031-150735230 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:150755802-150756393 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:150818658-150819158 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:150819159-150819659 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:150891977-150892477 Neighboring gene MPRA-validated peak3898 silencer Neighboring gene ReSE screen-validated silencer GRCh37_chr2:150973602-150973830 Neighboring gene uncharacterized LOC105373682 Neighboring gene long intergenic non-protein coding RNA 1818 Neighboring gene long intergenic non-protein coding RNA 1817

Genomic regions, transcripts, and products

Expression

  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_145421.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK057517
    Related
    ENST00000295052.3

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    149767506..149859191 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    150217944..150309301 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_153041.1: Suppressed sequence

    Description
    NM_153041.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.