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Htr2b 5-hydroxytryptamine (serotonin) receptor 2B [ Mus musculus (house mouse) ]

Gene ID: 15559, updated on 27-Nov-2024

Summary

Official Symbol
Htr2bprovided by MGI
Official Full Name
5-hydroxytryptamine (serotonin) receptor 2Bprovided by MGI
Primary source
MGI:MGI:109323
See related
Ensembl:ENSMUSG00000026228 AllianceGenome:MGI:109323
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
5-HT2B; 5-HT-2B; 5-HT-2F
Summary
Enables G protein-coupled serotonin receptor activity; GTPase activator activity; and serotonin binding activity. Involved in several processes, including ERK1 and ERK2 cascade; phospholipase C-activating serotonin receptor signaling pathway; and positive regulation of endothelial cell proliferation. Acts upstream of or within heart development. Located in cytoplasm and plasma membrane. Part of G protein-coupled serotonin receptor complex. Is expressed in several structures, including alimentary system; central nervous system; embryo mesenchyme; genitourinary system; and sensory organ. Used to study hypertrophic cardiomyopathy. Human ortholog(s) of this gene implicated in metabolic dysfunction-associated steatohepatitis and steatotic liver disease. Orthologous to human HTR2B (5-hydroxytryptamine receptor 2B). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Low expression observed in reference dataset See more
Orthologs
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Genomic context

See Htr2b in Genome Data Viewer
Location:
1 C5; 1 43.94 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (86025268..86043960, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (86097546..86116231, complement)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 2810459M11 gene Neighboring gene STARR-positive B cell enhancer ABC_E1552 Neighboring gene proteasome (prosome, macropain) 26S subunit, non-ATPase, 1 Neighboring gene predicted gene, 22786 Neighboring gene predicted gene, 53570 Neighboring gene STARR-seq mESC enhancer starr_01562 Neighboring gene STARR-seq mESC enhancer starr_01563 Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:88051083-88051236 Neighboring gene STARR-positive B cell enhancer ABC_E4330 Neighboring gene armadillo repeat containing 9 Neighboring gene STARR-seq mESC enhancer starr_01567 Neighboring gene STARR-positive B cell enhancer mm9_chr1:88110756-88111056 Neighboring gene STARR-positive B cell enhancer mm9_chr1:88125353-88125654 Neighboring gene STARR-seq mESC enhancer starr_01568 Neighboring gene STARR-positive B cell enhancer mm9_chr1:88154834-88155134 Neighboring gene predicted gene, 46098 Neighboring gene predicted gene 16341

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (4) 
  • Targeted (6)  1 citation

Pathways from PubChem

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables G protein-coupled serotonin receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables G protein-coupled serotonin receptor activity IDA
Inferred from Direct Assay
more info
PubMed 
enables G protein-coupled serotonin receptor activity ISO
Inferred from Sequence Orthology
more info
PubMed 
enables G protein-coupled serotonin receptor activity TAS
Traceable Author Statement
more info
PubMed 
enables G-protein alpha-subunit binding ISO
Inferred from Sequence Orthology
more info
 
enables G-protein alpha-subunit binding ISS
Inferred from Sequence or Structural Similarity
more info
 
enables GTPase activator activity IMP
Inferred from Mutant Phenotype
more info
PubMed 
enables Gq/11-coupled serotonin receptor activity IEA
Inferred from Electronic Annotation
more info
 
enables Gq/11-coupled serotonin receptor activity ISO
Inferred from Sequence Orthology
more info
 
enables neurotransmitter receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
 
enables serotonin binding IDA
Inferred from Direct Assay
more info
PubMed 
enables serotonin binding ISO
Inferred from Sequence Orthology
more info
PubMed 
enables serotonin receptor activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in ERK1 and ERK2 cascade IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in ERK1 and ERK2 cascade ISO
Inferred from Sequence Orthology
more info
 
involved_in G protein-coupled receptor signaling pathway ISO
Inferred from Sequence Orthology
more info
 
involved_in G protein-coupled receptor signaling pathway ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in G protein-coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in G protein-coupled serotonin receptor signaling pathway ISO
Inferred from Sequence Orthology
more info
 
involved_in G protein-coupled serotonin receptor signaling pathway ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in cGMP-mediated signaling ISO
Inferred from Sequence Orthology
more info
 
involved_in cGMP-mediated signaling ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in calcium-mediated signaling ISO
Inferred from Sequence Orthology
more info
 
involved_in calcium-mediated signaling ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in cardiac muscle hypertrophy IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in cellular response to amine stimulus ISO
Inferred from Sequence Orthology
more info
 
involved_in cellular response to serotonin ISO
Inferred from Sequence Orthology
more info
 
involved_in chemical synaptic transmission IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in embryonic morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
acts_upstream_of_or_within heart development IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in heart morphogenesis IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in intestine smooth muscle contraction ISO
Inferred from Sequence Orthology
more info
 
involved_in intestine smooth muscle contraction ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in intracellular calcium ion homeostasis IEA
Inferred from Electronic Annotation
more info
 
involved_in intracellular calcium ion homeostasis ISO
Inferred from Sequence Orthology
more info
 
involved_in monoatomic ion transmembrane transport ISO
Inferred from Sequence Orthology
more info
 
involved_in negative regulation of apoptotic process IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in neural crest cell differentiation IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in neural crest cell migration IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in phosphatidylinositol 3-kinase/protein kinase B signal transduction ISO
Inferred from Sequence Orthology
more info
 
involved_in phospholipase C-activating serotonin receptor signaling pathway IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in phospholipase C-activating serotonin receptor signaling pathway IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in phospholipase C-activating serotonin receptor signaling pathway ISO
Inferred from Sequence Orthology
more info
 
involved_in phospholipase C-activating serotonin receptor signaling pathway ISS
Inferred from Sequence or Structural Similarity
more info
 
acts_upstream_of_or_within phospholipase C-activating serotonin receptor signaling pathway TAS
Traceable Author Statement
more info
PubMed 
involved_in phosphorylation ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of ERK1 and ERK2 cascade IEA
Inferred from Electronic Annotation
more info
 
involved_in positive regulation of ERK1 and ERK2 cascade ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of MAP kinase activity ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of canonical NF-kappaB signal transduction ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in positive regulation of cell division IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of cell population proliferation ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of cell population proliferation ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in positive regulation of cytokine production IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of cytokine production ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of cytokine production ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in positive regulation of endothelial cell proliferation IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in positive regulation of endothelial cell proliferation ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of nitric-oxide synthase activity ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of phosphatidylinositol biosynthetic process ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of phosphatidylinositol biosynthetic process ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in protein kinase C signaling ISO
Inferred from Sequence Orthology
more info
 
involved_in regulation of behavior IMP
Inferred from Mutant Phenotype
more info
PubMed 
involved_in regulation of behavior ISO
Inferred from Sequence Orthology
more info
 
involved_in release of sequestered calcium ion into cytosol IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in release of sequestered calcium ion into cytosol ISO
Inferred from Sequence Orthology
more info
 
involved_in release of sequestered calcium ion into cytosol ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in response to xenobiotic stimulus IEA
Inferred from Electronic Annotation
more info
 
involved_in response to xenobiotic stimulus ISO
Inferred from Sequence Orthology
more info
 
involved_in serotonin receptor signaling pathway IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in vasoconstriction ISO
Inferred from Sequence Orthology
more info
 
involved_in vasoconstriction ISS
Inferred from Sequence or Structural Similarity
more info
 
Component Evidence Code Pubs
part_of G protein-coupled serotonin receptor complex IDA
Inferred from Direct Assay
more info
PubMed 
part_of G protein-coupled serotonin receptor complex ISO
Inferred from Sequence Orthology
more info
 
located_in cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
 
is_active_in dendrite IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in dendrite ISO
Inferred from Sequence Orthology
more info
 
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 
located_in neuronal cell body ISO
Inferred from Sequence Orthology
more info
 
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
5-hydroxytryptamine receptor 2B
Names
NP75 protein
serotonin receptor 2B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_008311.3NP_032337.2  5-hydroxytryptamine receptor 2B

    See identical proteins and their annotated locations for NP_032337.2

    Status: VALIDATED

    Source sequence(s)
    AC157768
    Consensus CDS
    CCDS35644.1
    UniProtKB/Swiss-Prot
    Q02152, Q8JZK5, Q9QWS2
    Related
    ENSMUSP00000027431.7, ENSMUST00000027431.7
    Conserved Domains (2) summary
    pfam00001
    Location:70379
    7tm_1; 7 transmembrane receptor (rhodopsin family)
    cl21561
    Location:70161
    7tm_4; Olfactory receptor

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    86025268..86043960 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006529146.4XP_006529209.1  5-hydroxytryptamine receptor 2B isoform X1

    See identical proteins and their annotated locations for XP_006529209.1

    Conserved Domains (2) summary
    cd14964
    Location:5581
    7tm_GPCRs; TM helix 1 [structural motif]
    cl28897
    Location:54413
    7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily
  2. XM_030250037.1XP_030105897.1  5-hydroxytryptamine receptor 2B isoform X2

    Conserved Domains (2) summary
    cd14964
    Location:88117
    7tm_GPCRs; TM helix 5 [structural motif]
    cl28897
    Location:59272
    7tm_GPCRs; seven-transmembrane G protein-coupled receptor superfamily