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ZNF320 zinc finger protein 320 [ Homo sapiens (human) ]

Gene ID: 162967, updated on 27-Nov-2024

Summary

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Official Symbol
ZNF320provided by HGNC
Official Full Name
zinc finger protein 320provided by HGNC
Primary source
HGNC:HGNC:13842
See related
Ensembl:ENSG00000182986 MIM:606427; AllianceGenome:HGNC:13842
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ZFPL
Summary
ZNF320 encodes a Kruppel-like zinc finger protein. Members of this protein family are involved in activation or repression of transcription.[supplied by OMIM, Jul 2002]
Expression
Ubiquitous expression in urinary bladder (RPKM 3.5), thyroid (RPKM 3.3) and 25 other tissues See more
Orthologs
all
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Genomic context

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See ZNF320 in Genome Data Viewer
Location:
19q13.41
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 19 NC_000019.10 (52859491..52904320, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 19 NC_060943.1 (55943802..55989230, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (53362744..53400947, complement)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene zinc finger protein 600 Neighboring gene zinc finger protein 28 Neighboring gene PABPN1 pseudogene 2 Neighboring gene H3K27ac hESC enhancer GRCh37_chr19:53324831-53325332 Neighboring gene zinc finger protein 468 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15057 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr19:53379555-53380056 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15058 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15059 Neighboring gene zinc finger protein 888 Neighboring gene ZNF816-ZNF321P readthrough Neighboring gene H3K27ac hESC enhancer GRCh37_chr19:53425609-53426342 Neighboring gene H3K27ac hESC enhancer GRCh37_chr19:53426343-53427074 Neighboring gene ZNF888 antisense RNA 1 Neighboring gene zinc finger protein 321, pseudogene Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr19:53445795-53446619

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. ZNF320 is a hypomethylated prognostic biomarker involved in immune infiltration of hepatocellular carcinoma and associated with cell cycle. Zhen J, et al. Aging (Albany NY), 2022 Oct 26. PMID 36287187, Free PMC Article
  2. A novel member of the WD-repeat gene family, WDR11, maps to the 10q26 region and is disrupted by a chromosome translocation in human glioblastoma cells. Chernova OB, et al. Oncogene, 2001 Aug 30. PMID 11536051
  3. Genome-wide association study of Alzheimer's disease with psychotic symptoms. Hollingworth P, et al. Mol Psychiatry, 2012 Dec. PMID 22005930, Free PMC Article
  4. Acetylation-Mimic Mutation of TRIM28-Lys304 to Gln Attenuates the Interaction with KRAB-Zinc-Finger Proteins and Affects Gene Expression in Leukemic K562 Cells. Chang YJ, et al. Int J Mol Sci, 2023 Jun 6. PMID 37372979, Free PMC Article
  5. N(6)-Methyladenosine on mRNA facilitates a phase-separated nuclear body that suppresses myeloid leukemic differentiation. Cheng Y, et al. Cancer Cell, 2021 Jul 12. PMID 34048709, Free PMC Article

See all (14) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. ZNF320 is a hypomethylated prognostic biomarker involved in immune infiltration of hepatocellular carcinoma and associated with cell cycle.
    Title: ZNF320 is a hypomethylated prognostic biomarker involved in immune infiltration of hepatocellular carcinoma and associated with cell cycle.
Submit: New GeneRIF Correction

Phenotypes

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Find tests for this gene in the NIH Genetic Testing Registry (GTR)

Review eQTL and phenotype association data in this region using PheGenI

EBI GWAS Catalog

Description
Genome-wide association study of Alzheimer's disease with psychotic symptoms.
EBI GWAS Catalog

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

See Variation Viewer (GRCh38)

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Clone Names

  • DKFZp686G16228

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
zinc finger protein 320
Names
zinc finger gene 320
zinc finger protein like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001351773.2 → NP_001338702.1  zinc finger protein 320 isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1-5 encode the same protein (isoform 1).
    Source sequence(s)
    AC010487, AI344388, AK096348, BC131555, DA025391, DA742339
    Consensus CDS
    CCDS33095.1
    UniProtKB/Swiss-Prot
    A2RRD8, Q8NDR6
    Related
    ENSP00000375660.2, ENST00000391781.6
    Conserved Domains (4) summary
    COG5048
    Location:147 → 483
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:25 → 216
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:303 → 323
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:7 → 48
    KRAB; KRAB box

  2. NM_001351774.2 → NP_001338703.1  zinc finger protein 320 isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. Variants 1-5 encode the same protein (isoform 1).
    Source sequence(s)
    AC010487, AI344388, AK096348, BC105738, BC131555, DA742339, DA852671
    Consensus CDS
    CCDS33095.1
    UniProtKB/Swiss-Prot
    A2RRD8, Q8NDR6
    Related
    ENSP00000506814.1, ENST00000682928.1
    Conserved Domains (4) summary
    COG5048
    Location:147 → 483
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:25 → 216
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:303 → 323
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:7 → 48
    KRAB; KRAB box

  3. NM_001351775.2 → NP_001338704.1  zinc finger protein 320 isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) differs in the 5' UTR compared to variant 1. Variants 1-5 encode the same protein (isoform 1).
    Source sequence(s)
    AC010487, AI344388, AK096348, BC105738, BC131555, DA742339, DA852671
    Consensus CDS
    CCDS33095.1
    UniProtKB/Swiss-Prot
    A2RRD8, Q8NDR6
    Conserved Domains (4) summary
    COG5048
    Location:147 → 483
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:25 → 216
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:303 → 323
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:7 → 48
    KRAB; KRAB box

  4. NM_001351776.2 → NP_001338705.1  zinc finger protein 320 isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) differs in the 5' UTR compared to variant 1. Variants 1-5 encode the same protein (isoform 1).
    Source sequence(s)
    AC010487, AI344388, AK096348, BC131555, DA742339, DA852671
    Consensus CDS
    CCDS33095.1
    UniProtKB/Swiss-Prot
    A2RRD8, Q8NDR6
    Conserved Domains (4) summary
    COG5048
    Location:147 → 483
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:25 → 216
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:303 → 323
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:7 → 48
    KRAB; KRAB box

  5. NM_001351777.2 → NP_001338706.1  zinc finger protein 320 isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (6) contains two alternate exons in the 3' coding region, including an alternate terminal exon, compared to variant 1. The encoded isoform (2) is significantly shorter, and contains a distinct C-terminus compared to isoform 1.
    Source sequence(s)
    AC008813, AC010487, CA425481, DA025391, DA415801, DA742339, DC418794
    Consensus CDS
    CCDS92678.1
    UniProtKB/TrEMBL
    A0A669KBJ2
    Conserved Domains (1) summary
    pfam01352
    Location:7 → 48
    KRAB; KRAB box

  6. NM_001387570.1 → NP_001374499.1  zinc finger protein 320 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC008813, AC010487
    Consensus CDS
    CCDS92678.1
    UniProtKB/TrEMBL
    A0A669KBJ2
    Related
    ENSP00000501288.1, ENST00000594408.3
    Conserved Domains (1) summary
    pfam01352
    Location:7 → 48
    KRAB; KRAB box

  7. NM_001387571.1 → NP_001374500.1  zinc finger protein 320 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC008813, AC010487
    Consensus CDS
    CCDS92678.1
    UniProtKB/TrEMBL
    A0A669KBJ2
    Related
    ENSP00000500974.1, ENST00000673631.1
    Conserved Domains (1) summary
    pfam01352
    Location:7 → 48
    KRAB; KRAB box

  8. NM_001387572.1 → NP_001374501.1  zinc finger protein 320 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC010487
    Consensus CDS
    CCDS33095.1
    UniProtKB/Swiss-Prot
    A2RRD8, Q8NDR6
    Related
    ENSP00000473091.1, ENST00000595635.5
    Conserved Domains (4) summary
    COG5048
    Location:147 → 483
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:25 → 216
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:303 → 323
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:7 → 48
    KRAB; KRAB box

  9. NM_001387573.1 → NP_001374502.1  zinc finger protein 320 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC010487
    Consensus CDS
    CCDS33095.1
    UniProtKB/Swiss-Prot
    A2RRD8, Q8NDR6
    Conserved Domains (4) summary
    COG5048
    Location:147 → 483
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:25 → 216
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:303 → 323
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:7 → 48
    KRAB; KRAB box

  10. NM_001387574.1 → NP_001374503.1  zinc finger protein 320 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC010487
    Consensus CDS
    CCDS33095.1
    UniProtKB/Swiss-Prot
    A2RRD8, Q8NDR6
    Conserved Domains (4) summary
    COG5048
    Location:147 → 483
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:25 → 216
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:303 → 323
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:7 → 48
    KRAB; KRAB box

  11. NM_001387575.1 → NP_001374504.1  zinc finger protein 320 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC010487
    Consensus CDS
    CCDS33095.1
    UniProtKB/Swiss-Prot
    A2RRD8, Q8NDR6
    Conserved Domains (4) summary
    COG5048
    Location:147 → 483
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:25 → 216
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:303 → 323
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:7 → 48
    KRAB; KRAB box

  12. NM_001387576.1 → NP_001374505.1  zinc finger protein 320 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC010487
    Consensus CDS
    CCDS33095.1
    UniProtKB/Swiss-Prot
    A2RRD8, Q8NDR6
    Conserved Domains (4) summary
    COG5048
    Location:147 → 483
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:25 → 216
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:303 → 323
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:7 → 48
    KRAB; KRAB box

  13. NM_001387577.1 → NP_001374506.1  zinc finger protein 320 isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC010487
    Consensus CDS
    CCDS33095.1
    UniProtKB/Swiss-Prot
    A2RRD8, Q8NDR6
    Conserved Domains (4) summary
    COG5048
    Location:147 → 483
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:25 → 216
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:303 → 323
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:7 → 48
    KRAB; KRAB box

  14. NM_207333.4 → NP_997216.2  zinc finger protein 320 isoform 1

    See identical proteins and their annotated locations for NP_997216.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longer isoform (1). Variants 1-5 encode the same protein (isoform 1).
    Source sequence(s)
    AC010487, AI344388, AK096348, BC131555, DA025391, DA742339
    Consensus CDS
    CCDS33095.1
    UniProtKB/Swiss-Prot
    A2RRD8, Q8NDR6
    Conserved Domains (4) summary
    COG5048
    Location:147 → 483
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:25 → 216
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:303 → 323
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:7 → 48
    KRAB; KRAB box

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p14 Primary Assembly

    Range
    52859491..52904320 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024451397.2 → XP_024307165.1  zinc finger protein 320 isoform X2

    Conserved Domains (3) summary
    sd00017
    Location:155 → 175
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:7 → 48
    KRAB; KRAB box
    pfam13465
    Location:168 → 191
    zf-H2C2_2; Zinc-finger double domain

  2. XM_047438310.1 → XP_047294266.1  zinc finger protein 320 isoform X2

  3. XM_047438309.1 → XP_047294265.1  zinc finger protein 320 isoform X2

  4. XM_024451396.2 → XP_024307164.1  zinc finger protein 320 isoform X2

    Conserved Domains (3) summary
    sd00017
    Location:155 → 175
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam01352
    Location:7 → 48
    KRAB; KRAB box
    pfam13465
    Location:168 → 191
    zf-H2C2_2; Zinc-finger double domain

  5. XM_047438305.1 → XP_047294261.1  zinc finger protein 320 isoform X1

    UniProtKB/Swiss-Prot
    A2RRD8, Q8NDR6

  6. XM_047438308.1 → XP_047294264.1  zinc finger protein 320 isoform X1

    UniProtKB/Swiss-Prot
    A2RRD8, Q8NDR6

  7. XM_047438306.1 → XP_047294262.1  zinc finger protein 320 isoform X1

    UniProtKB/Swiss-Prot
    A2RRD8, Q8NDR6

  8. XM_047438302.1 → XP_047294258.1  zinc finger protein 320 isoform X1

    UniProtKB/Swiss-Prot
    A2RRD8, Q8NDR6

  9. XM_047438301.1 → XP_047294257.1  zinc finger protein 320 isoform X1

    UniProtKB/Swiss-Prot
    A2RRD8, Q8NDR6

  10. XM_047438307.1 → XP_047294263.1  zinc finger protein 320 isoform X1

    UniProtKB/Swiss-Prot
    A2RRD8, Q8NDR6

  11. XM_047438300.1 → XP_047294256.1  zinc finger protein 320 isoform X1

    UniProtKB/Swiss-Prot
    A2RRD8, Q8NDR6

  12. XM_047438303.1 → XP_047294259.1  zinc finger protein 320 isoform X1

    UniProtKB/Swiss-Prot
    A2RRD8, Q8NDR6

  13. XM_047438304.1 → XP_047294260.1  zinc finger protein 320 isoform X1

    UniProtKB/Swiss-Prot
    A2RRD8, Q8NDR6

RNA

  1. XR_002958275.2 RNA Sequence

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060943.1 Alternate T2T-CHM13v2.0

    Range
    55943802..55989230 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054320050.1 → XP_054176025.1  zinc finger protein 320 isoform X2

  2. XM_054320049.1 → XP_054176024.1  zinc finger protein 320 isoform X2

  3. XM_054320048.1 → XP_054176023.1  zinc finger protein 320 isoform X2

  4. XM_054320047.1 → XP_054176022.1  zinc finger protein 320 isoform X2

  5. XM_054320043.1 → XP_054176018.1  zinc finger protein 320 isoform X1

    UniProtKB/Swiss-Prot
    A2RRD8, Q8NDR6

  6. XM_054320046.1 → XP_054176021.1  zinc finger protein 320 isoform X1

    UniProtKB/Swiss-Prot
    A2RRD8, Q8NDR6

  7. XM_054320041.1 → XP_054176016.1  zinc finger protein 320 isoform X1

    UniProtKB/Swiss-Prot
    A2RRD8, Q8NDR6

  8. XM_054320044.1 → XP_054176019.1  zinc finger protein 320 isoform X1

    UniProtKB/Swiss-Prot
    A2RRD8, Q8NDR6

  9. XM_054320040.1 → XP_054176015.1  zinc finger protein 320 isoform X1

    UniProtKB/Swiss-Prot
    A2RRD8, Q8NDR6

  10. XM_054320045.1 → XP_054176020.1  zinc finger protein 320 isoform X1

    UniProtKB/Swiss-Prot
    A2RRD8, Q8NDR6

  11. XM_054320039.1 → XP_054176014.1  zinc finger protein 320 isoform X1

    UniProtKB/Swiss-Prot
    A2RRD8, Q8NDR6

  12. XM_054320042.1 → XP_054176017.1  zinc finger protein 320 isoform X1

    UniProtKB/Swiss-Prot
    A2RRD8, Q8NDR6

RNA

  1. XR_008485111.1 RNA Sequence

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NG_024200.2: Suppressed sequence

    Description
    NG_024200.2: This RefSeq was removed because there is now support for transcription in this region.
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A2RRD8.1 GenPept UniProtKB/Swiss-Prot:A2RRD8

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