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Nap1l3 nucleosome assembly protein 1-like 3 [ Rattus norvegicus (Norway rat) ]

Gene ID: 170914, updated on 27-Nov-2024

Summary

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Official Symbol
Nap1l3provided by RGD
Official Full Name
nucleosome assembly protein 1-like 3provided by RGD
Primary source
RGD:620990
See related
EnsemblRapid:ENSRNOG00000029087 AllianceGenome:RGD:620990
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to enable chromatin binding activity and histone binding activity. Predicted to be involved in nucleosome assembly. Predicted to be located in chromatin. Predicted to be active in nucleus. Orthologous to human NAP1L3 (nucleosome assembly protein 1 like 3). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs
human mouse all
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Genomic context

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See Nap1l3 in Genome Data Viewer
Location:
Xq31
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) X NC_086039.1 (92607628..92610426, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) X NC_051356.1 (88347595..88350393, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) X NC_005120.4 (95059334..95062132, complement)

Chromosome X - NC_086039.1Genomic Context describing neighboring genes Neighboring gene sphingomyelin synthase 1, pseudogene 1 Neighboring gene KAT8 regulatory NSL complex subunit 2, pseudogene 2 Neighboring gene U7 small nuclear RNA Neighboring gene josephin-1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Cloning, expression pattern and mapping to Xq of NAP1L3, a gene encoding a peptide homologous to human and yeast nucleosome assembly proteins. Watanabe TK, et al. Cytogenet Cell Genet, 1996. PMID 8976385
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC124570

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables chromatin binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables histone binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in nucleosome assembly IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in chromatin IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
nucleosome assembly protein 1-like 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_133402.2 → NP_596893.1  nucleosome assembly protein 1-like 3

    See identical proteins and their annotated locations for NP_596893.1

    Status: PROVISIONAL

    Source sequence(s)
    BC101932
    UniProtKB/Swiss-Prot
    Q924R9
    UniProtKB/TrEMBL
    A6IVC2
    Related
    ENSRNOP00000048930.3, ENSRNOT00000049956.5
    Conserved Domains (3) summary
    pfam00956
    Location:345 → 516
    NAP; Nucleosome assembly protein (NAP)
    pfam08597
    Location:204 → 266
    eIF3_subunit; Translation initiation factor eIF3 subunit
    cl08298
    Location:109 → 149
    NAP; Nucleosome assembly protein (NAP)

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086039.1 Reference GRCr8

    Range
    92607628..92610426 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q924R9.1 GenPept UniProtKB/Swiss-Prot:Q924R9

Gene LinkOut

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