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ptp-5.3 Tyrosine-protein phosphatase domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 171660, updated on 2-Nov-2024

Summary

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Official Symbol
ptp-5.3
Official Full Name
Tyrosine-protein phosphatase domain-containing protein
Primary source
WormBase:WBGene00021207
Locus tag
CELE_Y18H1A.1
See related
AllianceGenome:WB:WBGene00021207
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable protein tyrosine phosphatase activity. Predicted to be involved in protein dephosphorylation. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See ptp-5.3 in Genome Data Viewer
Location:
chromosome: I
Exon count:
5
Sequence:
Chromosome: I; NC_003279.8 (688257..691332)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Glycosyltransferase family 92 protein Neighboring gene choline-phosphate cytidylyltransferase Neighboring gene non-specific serine/threonine protein kinase Neighboring gene Histidine phosphatase family protein Neighboring gene CBF1-interacting co-repressor CIR N-terminal domain-containing protein;Cir_N domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003279.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables protein tyrosine phosphatase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in protein dephosphorylation IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Tyrosine-protein phosphatase domain-containing protein
NP_490769.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    688257..691332
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_058368.6 → NP_490769.2  Tyrosine-protein phosphatase domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_490769.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9BL95
    Conserved Domains (1) summary
    smart00194
    Location:186 → 433
    PTPc; Protein tyrosine phosphatase, catalytic domain
Nucleotide Protein
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