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Y47G6A.18 Golgi phosphoprotein 3 homolog sauron [ Caenorhabditis elegans ]

Gene ID: 171919, updated on 2-Nov-2024

Summary

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Official Symbol
Y47G6A.18
Official Full Name
Golgi phosphoprotein 3 homolog sauron
Primary source
WormBase:WBGene00021644
Locus tag
CELE_Y47G6A.18
See related
AllianceGenome:WB:WBGene00021644
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable phosphatidylinositol-4-phosphate binding activity. Predicted to be involved in Golgi organization and Golgi vesicle transport. Predicted to be located in Golgi membrane. Predicted to be active in Golgi cisterna; cytosol; and trans-Golgi network. Orthologous to several human genes including GOLPH3 (golgi phosphoprotein 3). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See Y47G6A.18 in Genome Data Viewer
Location:
chromosome: I
Exon count:
5
Sequence:
Chromosome: I; NC_003279.8 (3508398..3512733, complement)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene Sugar phosphate transporter domain-containing protein Neighboring gene ncRNA Neighboring gene Histone acetyltransferase GCN5 Neighboring gene Peptidase M14 carboxypeptidase A domain-containing protein;ShKT domain-containing protein Neighboring gene 40S ribosomal protein S19-binding protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003279.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling. Artan M, et al. J Biol Chem, 2021 Sep. PMID 34416233, Free PMC Article
  2. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
  3. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
  4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables phosphatidylinositol-4-phosphate binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables phosphatidylinositol-4-phosphate binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in Golgi organization IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in Golgi to plasma membrane protein transport IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in Golgi vesicle budding IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
  
is_active_in Golgi cisterna IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
  
is_active_in cytosol IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
is_active_in trans-Golgi network IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
Golgi phosphoprotein 3 homolog sauron
NP_491172.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    3508398..3512733 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_058771.5 → NP_491172.2  Golgi phosphoprotein 3 homolog sauron [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_491172.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9N3S8
    Conserved Domains (1) summary
    pfam05719
    Location:45 → 254
    GPP34; Golgi phosphoprotein 3 (GPP34)
Nucleotide Protein
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