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phat-2 ShKT domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 172130, updated on 2-Nov-2024

Summary

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Official Symbol
phat-2
Official Full Name
ShKT domain-containing protein
Primary source
WormBase:WBGene00016733
Locus tag
CELE_C46H11.9
See related
AllianceGenome:WB:WBGene00016733
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Involved in nematode pharyngeal gland morphogenesis. Is expressed in g1AL; g1AR; g1P; g2L; and g2R. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See phat-2 in Genome Data Viewer
Location:
chromosome: I
Exon count:
4
Sequence:
Chromosome: I; NC_003279.8 (5046394..5048003, complement)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene ShKT domain-containing protein Neighboring gene ncRNA Neighboring gene ShKT domain-containing protein Neighboring gene ncRNA Neighboring gene Flavin-containing monooxygenase Neighboring gene F-box C protein;F-box domain-containing protein Neighboring gene Uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003279.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The HLH-6 transcription factor regulates C. elegans pharyngeal gland development and function. Smit RB, et al. PLoS Genet, 2008 Oct. PMID 18927627, Free PMC Article
  2. A lineage-resolved cartography of microRNA promoter activity in C. elegans empowers multidimensional developmental analysis. Xu W, et al. Nat Commun, 2024 Mar 30. PMID 38555276, Free PMC Article
  3. Functional proteomics reveals the biochemical niche of C. elegans DCR-1 in multiple small-RNA-mediated pathways. Duchaine TF, et al. Cell, 2006 Jan 27. PMID 16439208
  4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Process Evidence Code Pubs
involved_in nematode pharyngeal gland morphogenesis IEP
Inferred from Expression Pattern
more info
 PubMed 

General protein information

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Preferred Names
ShKT domain-containing protein
NP_491509.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    5046394..5048003 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_059108.7 → NP_491509.1  ShKT domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_491509.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9GYJ2
    Conserved Domains (1) summary
    pfam01549
    Location:205 → 246
    ShK; ShK domain-like
Nucleotide Protein
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