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syp-6 Protein MRVI1;Thyroid receptor-interacting protein 11 [ Caenorhabditis elegans ]

Gene ID: 172375, updated on 2-Nov-2024

Summary

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Official Symbol
syp-6
Official Full Name
Protein MRVI1;Thyroid receptor-interacting protein 11
Primary source
WormBase:WBGene00019002
Locus tag
CELE_F57B10.4
See related
AllianceGenome:WB:WBGene00019002
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Is expressed in germ line. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See syp-6 in Genome Data Viewer
Location:
chromosome: I
Exon count:
10
Sequence:
Chromosome: I; NC_003279.8 (6566125..6568954)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene GOLD domain-containing protein Neighboring gene BAG family molecular chaperone regulator 1 Neighboring gene Meiotic spindle formation protein 2 Neighboring gene 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Neighboring gene CREB-H transcription factor homolog let-607 Neighboring gene ncRNA Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003279.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification of novel synaptonemal complex components in C. elegans. Hurlock ME, et al. J Cell Biol, 2020 May 4. PMID 32211899, Free PMC Article
  2. Sexual dimorphic regulation of recombination by the synaptonemal complex in C. elegans. Cahoon CK, et al. Elife, 2023 Oct 5. PMID 37796106, Free PMC Article
  3. Multivalent weak interactions between assembly units drive synaptonemal complex formation. Zhang Z, et al. J Cell Biol, 2020 May 4. PMID 32211900, Free PMC Article
  4. SYP-5 regulates meiotic thermotolerance in Caenorhabditis elegans. Liu Y, et al. J Mol Cell Biol, 2021 Dec 6. PMID 34081106, Free PMC Article
  5. Skp1 proteins are structural components of the synaptonemal complex in C. elegans. Blundon JM, et al. Sci Adv, 2024 Feb 16. PMID 38354250, Free PMC Article

See all (8) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Multivalent weak interactions between assembly units drive synaptonemal complex formation.
    Title: Multivalent weak interactions between assembly units drive synaptonemal complex formation.
  2. Identification of novel synaptonemal complex components in C. elegans.
    Title: Identification of novel synaptonemal complex components in C. elegans.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

General protein information

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Preferred Names
Protein MRVI1;Thyroid receptor-interacting protein 11
NP_001379336.1
  • Confirmed by transcript evidence
NP_001379337.1
  • Confirmed by transcript evidence
NP_001379338.1
  • Confirmed by transcript evidence
NP_491895.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    6566125..6568954
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001392463.1 → NP_001379337.1  Protein MRVI1 [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7R9SUL5
    Conserved Domains (1) summary
    TIGR02168
    Location:136 → 349
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  2. NM_001392460.1 → NP_001379336.1  Thyroid receptor-interacting protein 11 [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7R9SUX0
    Conserved Domains (1) summary
    TIGR02168
    Location:136 → 349
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  3. NM_059494.6 → NP_491895.1  Protein MRVI1 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_491895.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    O44741
    Conserved Domains (1) summary
    TIGR02168
    Location:136 → 349
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  4. NM_001392461.1 → NP_001379338.1  Thyroid receptor-interacting protein 11 [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A7R9SUK8
    Conserved Domains (1) summary
    TIGR02168
    Location:136 → 349
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
Nucleotide Protein
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