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hot-5 Homolog of Odr-2 (Two) [ Caenorhabditis elegans ]

Gene ID: 172671, updated on 4-Jan-2025

Summary

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Official Symbol
hot-5
Official Full Name
Homolog of Odr-2 (Two)
Primary source
WormBase:WBGene00001990
Locus tag
CELE_K07A12.6
See related
AllianceGenome:WB:WBGene00001990
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be involved in olfactory behavior and response to odorant. Predicted to be active in axon and neuronal cell body. [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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See hot-5 in Genome Data Viewer
Location:
chromosome: I
Exon count:
4
Sequence:
Chromosome: I; NC_003279.8 (8683197..8687217, complement)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Ovule protein Neighboring gene Leucine-rich repeat-containing protein egg-6 Neighboring gene ncRNA Neighboring gene Tr-type G domain-containing protein Neighboring gene Small ribosomal subunit protein uS15m

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003279.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Caenorhabditis elegans odr-2 gene encodes a novel Ly-6-related protein required for olfaction. Chou JH, et al. Genetics, 2001 Jan. PMID 11139503, Free PMC Article
  2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Process Evidence Code Pubs
involved_in olfactory behavior IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in response to odorant IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in axon IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in neuronal cell body IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
Homolog of Odr-2 (Two)
NP_492349.1
  • Product from WormBase gene class hot;
    Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    8683197..8687217 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_059948.6 → NP_492349.1  Homolog of Odr-2 (Two) [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_492349.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    G5ED79
    Conserved Domains (1) summary
    pfam06579
    Location:26 → 151
    Ly-6_related; Caenorhabditis elegans ly-6-related protein
Nucleotide Protein
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