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sdz-30 SKN-1 Dependent Zygotic transcript [ Caenorhabditis elegans ]

Gene ID: 173198, updated on 9-Dec-2024

Summary

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Official Symbol
sdz-30
Official Full Name
SKN-1 Dependent Zygotic transcript
Primary source
WormBase:WBGene00011432
Locus tag
CELE_T04D3.2
See related
AllianceGenome:WB:WBGene00011432
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be involved in autophagy. Located in cytoplasm. [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

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See sdz-30 in Genome Data Viewer
Location:
chromosome: I
Exon count:
1
Sequence:
Chromosome: I; NC_003279.8 (13307051..13308685)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Protein sepa-1 Neighboring gene NTF2 domain-containing protein Neighboring gene Uncharacterized protein Neighboring gene tRNA-Thr Neighboring gene Phosphodiesterase;putative 3',5'-cyclic phosphodiesterase pde-1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003279.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. SEPA-1 mediates the specific recognition and degradation of P granule components by autophagy in C. elegans. Zhang Y, et al. Cell, 2009 Jan 23. PMID 19167332
  2. The Caenorhabditis elegans Argonautes ALG-1 and ALG-2: almost identical yet different. Tops BB, et al. Cold Spring Harb Symp Quant Biol, 2006. PMID 17381296
  3. In Vivo Interaction Proteomics in Caenorhabditis elegans Embryos Provides New Insights into P Granule Dynamics. Chen JX, et al. Mol Cell Proteomics, 2016 May. PMID 26912668, Free PMC Article
  4. Screening for cold tolerance genes in C. elegans, whose expressions are affected by anticancer drugs camptothecin and leptomycin B. Okahata M, et al. Sci Rep, 2024 Mar 5. PMID 38443452, Free PMC Article
  5. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Process Evidence Code Pubs
involved_in autophagy IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in cytoplasm IDA
Inferred from Direct Assay
more info
 PubMed 

General protein information

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Preferred Names
SKN-1 Dependent Zygotic transcript
NP_493341.2
  • Product from WormBase gene class sdz;
    Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    13307051..13308685
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_060940.4 → NP_493341.2  SKN-1 Dependent Zygotic transcript [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    O02297
Nucleotide Protein
Heading Accession and Version

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