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vps-28 Vacuolar protein sorting-associated protein 28 homolog [ Caenorhabditis elegans ]

Gene ID: 173229, updated on 2-Nov-2024

Summary

Official Symbol
vps-28
Official Full Name
Vacuolar protein sorting-associated protein 28 homolog
Primary source
WormBase:WBGene00013598
Locus tag
CELE_Y87G2A.10
See related
AllianceGenome:WB:WBGene00013598
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Involved in receptor catabolic process. Part of ESCRT I complex. Orthologous to human VPS28 (VPS28 subunit of ESCRT-I). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

See vps-28 in Genome Data Viewer
Location:
chromosome: I
Exon count:
4
Sequence:
Chromosome: I; NC_003279.8 (13586037..13588831, complement)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Glucose-6-phosphate isomerase Neighboring gene Ubiquitin-conjugating enzyme E2 S Neighboring gene EARP-interacting protein 1 Neighboring gene Lysosomal cobalamin transporter

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables protein-containing complex binding IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
part_of ESCRT I complex IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of ESCRT I complex IEA
Inferred from Electronic Annotation
more info
 
part_of ESCRT I complex IPI
Inferred from Physical Interaction
more info
PubMed 
located_in endosome IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
Vacuolar protein sorting-associated protein 28 homolog
NP_493382.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    13586037..13588831 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_060981.6NP_493382.1  Vacuolar protein sorting-associated protein 28 homolog [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_493382.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9NA26
    Conserved Domains (1) summary
    pfam03997
    Location:27205
    VPS28; VPS28 protein

RNA

  1. NR_023947.1 RNA Sequence

    Status: REVIEWED