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ZK849.1 PDZ domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 173288, updated on 28-Oct-2024

Summary

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Official Symbol
ZK849.1
Official Full Name
PDZ domain-containing protein
Primary source
WormBase:WBGene00014100
Locus tag
CELE_ZK849.1
See related
AllianceGenome:WB:WBGene00014100
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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Genomic context

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See ZK849.1 in Genome Data Viewer
Location:
chromosome: I
Exon count:
8
Sequence:
Chromosome: I; NC_003279.8 (14182595..14185707, complement)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Very-long-chain 3-oxoacyl-CoA synthase Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Axin-like protein pry-1 Neighboring gene ncRNA Neighboring gene PDZ domain-containing protein Neighboring gene NADH dehydrogenase subunit 1 Neighboring gene Bestrophin homolog 26 Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003279.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A genome-wide study of PDZ-domain interactions in C. elegans reveals a high frequency of non-canonical binding. Lenfant N, et al. BMC Genomics, 2010 Nov 26. PMID 21110867, Free PMC Article
  2. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
  3. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
  4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

General protein information

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Preferred Names
PDZ domain-containing protein
NP_493476.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    14182595..14185707 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_061075.6 → NP_493476.1  PDZ domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_493476.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    O18301
    Conserved Domains (1) summary
    cd00992
    Location:212 → 296
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
Nucleotide Protein
Heading Accession and Version

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