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gid-1 B30.2/SPRY domain-containing protein;CTLH domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 173332, updated on 4-Jan-2025

Summary

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Official Symbol
gid-1
Official Full Name
B30.2/SPRY domain-containing protein;CTLH domain-containing protein
Primary source
WormBase:WBGene00013202
Locus tag
CELE_Y54E5A.7
See related
AllianceGenome:WB:WBGene00013202
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Is expressed in several structures, including anal depressor muscle; hypodermis; nervous system; oocyte; and reproductive system. Orthologous to human RANBP10 (RAN binding protein 10) and RANBP9 (RAN binding protein 9). [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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See gid-1 in Genome Data Viewer
Location:
chromosome: I
Exon count:
11
Sequence:
Chromosome: I; NC_003279.8 (14711082..14715030)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene Nucleoporin p58/p45 Neighboring gene Polysaccharide biosynthesis domain-containing protein Neighboring gene DRBM domain-containing protein Neighboring gene Conserved plasma membrane protein;Pyridoxamine 5'-phosphate oxidase;Uncharacterized protein Neighboring gene Proteasome subunit pbs-5

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003279.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Defect-buffering cellular plasticity increases robustness of metazoan embryogenesis. Xiao L, et al. Cell Syst, 2022 Aug 17. PMID 35882226
  2. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
  3. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
  4. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
  5. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

General protein information

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Preferred Names
B30.2/SPRY domain-containing protein;CTLH domain-containing protein
NP_001252408.1
  • Confirmed by transcript evidence
NP_001252409.1
  • Confirmed by transcript evidence
NP_001252410.1
  • Confirmed by transcript evidence
NP_001252411.1
  • Confirmed by transcript evidence
NP_001382716.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    14711082..14715030
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001265479.3 → NP_001252408.1  B30.2/SPRY domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001252408.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9XWK4
    Conserved Domains (2) summary
    smart00668
    Location:282 → 340
    CTLH; C-terminal to LisH motif
    cl02614
    Location:75 → 212
    SPRY; SPRY domain

  2. NM_001265480.3 → NP_001252409.1  CTLH domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001252409.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F3Y5R0
    Conserved Domains (1) summary
    smart00668
    Location:55 → 113
    CTLH; C-terminal to LisH motif

  3. NM_001395800.1 → NP_001382716.1  B30.2/SPRY domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A8D9MH54

  4. NM_001265481.3 → NP_001252410.1  B30.2/SPRY domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001252410.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F3Y5R1

  5. NM_001265482.3 → NP_001252411.1  B30.2/SPRY domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001252411.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    F3Y5R2
Nucleotide Protein
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