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Y57G7A.3 Secreted protein [ Caenorhabditis elegans ]

Gene ID: 173507, updated on 9-Dec-2024

Summary

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Official Symbol
Y57G7A.3
Official Full Name
Secreted protein
Primary source
WormBase:WBGene00021967
Locus tag
CELE_Y57G7A.3
See related
AllianceGenome:WB:WBGene00021967
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be located in membrane. [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

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See Y57G7A.3 in Genome Data Viewer
Location:
chromosome: II
Exon count:
5
Sequence:
Chromosome: II; NC_003280.10 (1285782..1286373)

Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene Serpentine Receptor, class Z Neighboring gene protein of unknown function WSN domain-containing protein Neighboring gene Serpentine Receptor, class Z Neighboring gene pseudo Neighboring gene BZIP domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003280.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
  2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Secreted protein
NP_001022484.1
  • Confirmed by transcript evidence
NP_001022485.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003280.10 Reference assembly

    Range
    1285782..1286373
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001027313.2 → NP_001022484.1  Secreted protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001022484.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    H2L054
    Conserved Domains (1) summary
    pfam06678
    Location:2 → 107
    DUF1179; Protein of unknown function (DUF1179)

  2. NM_001027314.3 → NP_001022485.1  Secreted protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001022485.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q7KPD3
    Conserved Domains (1) summary
    pfam06678
    Location:2 → 39
    DUF1179; Protein of unknown function (DUF1179)
Nucleotide Protein
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