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Y51H7C.7 Nuclear nucleic acid-binding protein C1D [ Caenorhabditis elegans ]

Gene ID: 173517, updated on 4-Jan-2025

Summary

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Official Symbol
Y51H7C.7
Official Full Name
Nuclear nucleic acid-binding protein C1D
Primary source
WormBase:WBGene00021785
Locus tag
CELE_Y51H7C.7
See related
AllianceGenome:WB:WBGene00021785
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable DNA binding activity and RNA binding activity. Predicted to be involved in maturation of 5.8S rRNA and regulation of gene expression. Predicted to be located in cytoplasm and nucleus. Predicted to be part of exosome (RNase complex). Predicted to be active in nucleolus. Orthologous to human C1D (C1D nuclear receptor corepressor). [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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See Y51H7C.7 in Genome Data Viewer
Location:
chromosome: II
Exon count:
3
Sequence:
Chromosome: II; NC_003280.10 (1402569..1403215)

Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene PAN-3 domain-containing protein Neighboring gene Uncharacterized protein Neighboring gene Immediate early response 3-interacting protein 1 Neighboring gene Conserved oligomeric Golgi complex subunit 4 Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003280.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. SH3 interactome conserves general function over specific form. Xin X, et al. Mol Syst Biol, 2013. PMID 23549480, Free PMC Article
  2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in maturation of 5.8S rRNA IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in rRNA processing IEA
Inferred from Electronic Annotation
more info
  
involved_in regulation of gene expression IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
part_of exosome (RNase complex) IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in nucleolus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Nuclear nucleic acid-binding protein C1D
NP_493965.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003280.10 Reference assembly

    Range
    1402569..1403215
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_061564.4 → NP_493965.1  Nuclear nucleic acid-binding protein C1D [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_493965.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9N3J4
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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