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C27D9.1 F-box domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 173822, updated on 4-Jan-2025

Summary

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Official Symbol
C27D9.1
Official Full Name
F-box domain-containing protein
Primary source
WormBase:WBGene00016163
Locus tag
CELE_C27D9.1
See related
AllianceGenome:WB:WBGene00016163
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable alpha-(1->3)-fucosyltransferase activity. Predicted to be involved in fucosylation. [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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See C27D9.1 in Genome Data Viewer
Location:
chromosome: II
Exon count:
6
Sequence:
Chromosome: II; NC_003280.10 (4753413..4755603)

Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene MFS domain-containing protein Neighboring gene Exocyst complex component Sec8 Neighboring gene TransThyretin-Related family domain Neighboring gene Uncharacterized protein Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003280.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. C. elegans ORFeome version 1.1: experimental verification of the genome annotation and resource for proteome-scale protein expression. Reboul J, et al. Nat Genet, 2003 May. PMID 12679813
  2. A protein domain-based interactome network for C. elegans early embryogenesis. Boxem M, et al. Cell, 2008 Aug 8. PMID 18692475, Free PMC Article
  3. A map of the interactome network of the metazoan C. elegans. Li S, et al. Science, 2004 Jan 23. PMID 14704431, Free PMC Article
  4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables alpha-(1->3)-fucosyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in fucosylation IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
F-box domain-containing protein
NP_494851.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003280.10 Reference assembly

    Range
    4753413..4755603
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_062450.9 → NP_494851.2  F-box domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_494851.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q18255
    Conserved Domains (1) summary
    pfam06542
    Location:67 → 507
    PHA-1; Regulator protein PHA-1
Nucleotide Protein
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Gene LinkOut

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