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VF13D12L.3 Malate dehydrogenase [ Caenorhabditis elegans ]

Gene ID: 174795, updated on 4-Jan-2025

Summary

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Official Symbol
VF13D12L.3
Official Full Name
Malate dehydrogenase
Primary source
WormBase:WBGene00012149
Locus tag
CELE_VF13D12L.3
See related
AllianceGenome:WB:WBGene00012149
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable oxidoreductase activity. [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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See VF13D12L.3 in Genome Data Viewer
Location:
chromosome: II
Exon count:
9
Sequence:
Chromosome: II; NC_003280.10 (11706009..11713602)

Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene ERCC4 domain-containing protein Neighboring gene inositol-3-phosphate synthase Neighboring gene ncRNA Neighboring gene Cyclopropane-fatty-acyl-phospholipid synthase Neighboring gene MARVEL domain-containing protein Neighboring gene Prion-like-(Q/N-rich)-domain-bearing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003280.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. SAFER, an Analysis Method of Quantitative Proteomic Data, Reveals New Interactors of the C. elegans Autophagic Protein LGG-1. Yi Z, et al. J Proteome Res, 2016 May 6. PMID 26999449
  2. SH3 interactome conserves general function over specific form. Xin X, et al. Mol Syst Biol, 2013. PMID 23549480, Free PMC Article
  3. Depletion of endogenously biotinylated carboxylases enhances the sensitivity of TurboID-mediated proximity labeling in Caenorhabditis elegans. Artan M, et al. J Biol Chem, 2022 Sep. PMID 35933017, Free PMC Article
  4. Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling. Artan M, et al. J Biol Chem, 2021 Sep. PMID 34416233, Free PMC Article
  5. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Malate dehydrogenase
NP_496500.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003280.10 Reference assembly

    Range
    11706009..11713602
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_064099.8 → NP_496500.1  Malate dehydrogenase [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_496500.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    G5EDW8
    Conserved Domains (2) summary
    PLN00105
    Location:54 → 375
    PLN00105; malate/L-lactate dehydrogenase; Provisional
    pfam02615
    Location:53 → 379
    Ldh_2; Malate/L-lactate dehydrogenase
Nucleotide Protein
Heading Accession and Version

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