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pqn-87 MATH domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 174861, updated on 9-Dec-2024

Summary

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Official Symbol
pqn-87
Official Full Name
MATH domain-containing protein
Primary source
WormBase:WBGene00004167
Locus tag
CELE_Y57A10A.18
See related
AllianceGenome:WB:WBGene00004167
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable chromatin DNA binding activity and transcription coactivator activity. Predicted to be involved in positive regulation of DNA-templated transcription. [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

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See pqn-87 in Genome Data Viewer
Location:
chromosome: II
Exon count:
15
Sequence:
Chromosome: II; NC_003280.10 (12209095..12225086, complement)

Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene DNA-directed DNA polymerase Neighboring gene Trafficking protein particle complex subunit 5 Neighboring gene AQuaPorin or aquaglyceroporin related Neighboring gene pseudo Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene SRRM2 protein homolog rsr-2 Neighboring gene Stress-activated map kinase-interacting protein 1 homolog Neighboring gene ncRNA

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003280.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. LIN-41 and OMA Ribonucleoprotein Complexes Mediate a Translational Repression-to-Activation Switch Controlling Oocyte Meiotic Maturation and the Oocyte-to-Embryo Transition in Caenorhabditis elegans. Tsukamoto T, et al. Genetics, 2017 Aug. PMID 28576864, Free PMC Article
  2. ITSN-1 controls vesicle recycling at the neuromuscular junction and functions in parallel with DAB-1. Wang W, et al. Traffic, 2008 May. PMID 18298590, Free PMC Article
  3. FACT Sets a Barrier for Cell Fate Reprogramming in Caenorhabditis elegans and Human Cells. Kolundzic E, et al. Dev Cell, 2018 Sep 10. PMID 30078731, Free PMC Article
  4. A combined binary interaction and phenotypic map of C. elegans cell polarity proteins. Koorman T, et al. Nat Cell Biol, 2016 Mar. PMID 26780296, Free PMC Article
  5. SH3 interactome conserves general function over specific form. Xin X, et al. Mol Syst Biol, 2013. PMID 23549480, Free PMC Article

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables chromatin DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
MATH domain-containing protein
NP_001254335.1
  • Partially confirmed by transcript evidence
NP_001254336.1
  • Partially confirmed by transcript evidence
NP_001367160.1
  • Confirmed by transcript evidence
NP_001368162.1
  • Confirmed by transcript evidence
NP_496594.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003280.10 Reference assembly

    Range
    12209095..12225086 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001381625.2 → NP_001367160.1  MATH domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A5PEX6
    Conserved Domains (2) summary
    PTZ00121
    Location:802 → 1136
    PTZ00121; MAEBL; Provisional
    cd03772
    Location:174 → 311
    MATH_HAUSP; Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence ...

  2. NM_064193.4 → NP_496594.2  MATH domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_496594.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9U207
    Conserved Domains (2) summary
    PTZ00121
    Location:802 → 1136
    PTZ00121; MAEBL; Provisional
    cd03772
    Location:174 → 311
    MATH_HAUSP; Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence ...

  3. NM_001381626.2 → NP_001368162.1  MATH domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    K8ESL3
    Conserved Domains (2) summary
    PTZ00121
    Location:829 → 1163
    PTZ00121; MAEBL; Provisional
    cd03772
    Location:174 → 311
    MATH_HAUSP; Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence ...

  4. NM_001267407.4 → NP_001254336.1  MATH domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001254336.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    G2HK02
    Conserved Domains (2) summary
    PTZ00121
    Location:825 → 1159
    PTZ00121; MAEBL; Provisional
    cd03772
    Location:174 → 311
    MATH_HAUSP; Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence ...

  5. NM_001267406.4 → NP_001254335.1  MATH domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001254335.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    G2HK03
    Conserved Domains (2) summary
    PTZ00121
    Location:828 → 1162
    PTZ00121; MAEBL; Provisional
    cd03772
    Location:174 → 311
    MATH_HAUSP; Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence ...
Nucleotide Protein
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