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tag-280 Transmembrane protein [ Caenorhabditis elegans ]

Gene ID: 174885, updated on 2-Nov-2024

Summary

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Official Symbol
tag-280
Official Full Name
Transmembrane protein
Primary source
WormBase:WBGene00044322
Locus tag
CELE_F15A4.12
See related
AllianceGenome:WB:WBGene00044322
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to be involved in positive regulation of plasminogen activation. Predicted to be located in plasma membrane. Orthologous to human PLGRKT (plasminogen receptor with a C-terminal lysine). [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See tag-280 in Genome Data Viewer
Location:
chromosome: II
Exon count:
3
Sequence:
Chromosome: II; NC_003280.10 (12460652..12461471)

Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene Serpentine receptor class epsilon-38 Neighboring gene Uncharacterized protein Neighboring gene F-box domain-containing protein Neighboring gene Serpentine receptor class epsilon-37 Neighboring gene Serpentine receptor class gamma-16

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003280.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Amino acid and protein specificity of protein fatty acylation in C. elegans. Zhang B, et al. Proc Natl Acad Sci U S A, 2024 Jan 30. PMID 38252833, Free PMC Article
  2. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
  3. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
  4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by WormBase

Process Evidence Code Pubs
involved_in positive regulation of plasminogen activation IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in positive regulation of plasminogen activation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Transmembrane protein
NP_496653.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003280.10 Reference assembly

    Range
    12460652..12461471
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_064252.5 → NP_496653.1  Transmembrane protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_496653.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9U3J2
    Conserved Domains (1) summary
    pfam10166
    Location:1 → 129
    DUF2368; uncharacterized conserved protein (DUF2368)
Nucleotide Protein
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