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rpl-13A Large ribosomal subunit protein uL13 [ Caenorhabditis elegans ]

Gene ID: 175455, updated on 9-Dec-2024

Summary

Official Symbol
rpl-13A
Official Full Name
Large ribosomal subunit protein uL13
Primary source
WormBase:WBGene00004428
Locus tag
CELE_M01F1.2
See related
AllianceGenome:WB:WBGene00004428
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable mRNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in negative regulation of translation. Predicted to be part of cytosolic large ribosomal subunit. Predicted to be active in ribosome. Orthologous to human RPL13A (ribosomal protein L13a). [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

See rpl-13A in Genome Data Viewer
Location:
chromosome: III
Exon count:
3
Sequence:
Chromosome: III; NC_003281.10 (3502841..3503604, complement)

Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene Arrestin_N domain-containing protein Neighboring gene Lipoprotein;VWFD domain-containing protein Neighboring gene Lipoyl synthase, mitochondrial Neighboring gene Transmembrane protein 245 Neighboring gene ncRNA

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables mRNA binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
involved_in negative regulation of translation IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in translation IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
part_of cytosolic large ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of large ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 
is_active_in ribosome IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
Large ribosomal subunit protein uL13
NP_001379064.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003281.10 Reference assembly

    Range
    3502841..3503604 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001393308.1NP_001379064.1  Large ribosomal subunit protein uL13 [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q27389
    Conserved Domains (1) summary
    cl00333
    Location:5202
    Ribosomal_L13; Ribosomal protein L13. Protein L13, a large ribosomal subunit protein, is one of five proteins required for an early folding intermediate of 23S rRNA in the assembly of the large subunit. L13 is situated on the bottom of the large subunit, near the ...