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arcp-1 ANK_REP_REGION domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 175486, updated on 2-Nov-2024

Summary

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Official Symbol
arcp-1
Official Full Name
ANK_REP_REGION domain-containing protein
Primary source
WormBase:WBGene00009375
Locus tag
CELE_F34D10.6
See related
AllianceGenome:WB:WBGene00009375
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Is expressed in ciliated neurons. [provided by Alliance of Genome Resources, Nov 2024]
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Genomic context

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See arcp-1 in Genome Data Viewer
Location:
chromosome: III
Exon count:
22
Sequence:
Chromosome: III; NC_003281.10 (3747521..3759412, complement)

Chromosome III - NC_003281.10Genomic Context describing neighboring genes Neighboring gene C2H2-type domain-containing protein Neighboring gene ncRNA Neighboring gene Transcription factor ovo-like homolog lin-48 Neighboring gene Uncharacterized protein Neighboring gene SAND domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003281.10

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of the Doublesex/MAB-3 transcription factor DMD-9 in Caenorhabditis elegans. Godini R, et al. G3 (Bethesda), 2023 Feb 9. PMID 36454093, Free PMC Article
  2. Screening for cold tolerance genes in C. elegans, whose expressions are affected by anticancer drugs camptothecin and leptomycin B. Okahata M, et al. Sci Rep, 2024 Mar 5. PMID 38443452, Free PMC Article
  3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
ANK_REP_REGION domain-containing protein
NP_001254879.1
  • Confirmed by transcript evidence
NP_001254880.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003281.10 Reference assembly

    Range
    3747521..3759412 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001267950.2 → NP_001254879.1  ANK_REP_REGION domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001254879.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    C6KRH4
    Conserved Domains (6) summary
    PHA02875
    Location:895 → 1073
    PHA02875; ankyrin repeat protein; Provisional
    PHA03095
    Location:100 → 291
    PHA03095; ankyrin-like protein; Provisional
    sd00045
    Location:617 → 644
    ANK; ANK repeat [structural motif]
    pfam05186
    Location:1189 → 1224
    Dpy-30; Dpy-30 motif
    pfam12796
    Location:1003 → 1097
    Ank_2; Ankyrin repeats (3 copies)
    cl39094
    Location:460 → 503
    Ank_2; Ankyrin repeats (3 copies)

  2. NM_001267951.4 → NP_001254880.2  ANK_REP_REGION domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8MQ63
    Conserved Domains (6) summary
    PTZ00322
    Location:528 → 633
    PTZ00322; 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
    PHA02875
    Location:363 → 541
    PHA02875; ankyrin repeat protein; Provisional
    PHA03095
    Location:64 → 378
    PHA03095; ankyrin-like protein; Provisional
    sd00045
    Location:85 → 112
    ANK; ANK repeat [structural motif]
    pfam05186
    Location:657 → 692
    Dpy-30; Dpy-30 motif
    pfam12796
    Location:471 → 565
    Ank_2; Ankyrin repeats (3 copies)
Nucleotide Protein
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